Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6400

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6399: 14767 - HMMPfam-bZIP transcription factor-PF00170,ProSitePatterns-Basic-leucine zipper (bZIP) domain signature.-PS00036,SUPERFAMILY--SSF57959, at 724341 to 725780 14767 mRNA_6400: 14768 - K15720 N4BP2 NEDD4-binding protein 2, at 726204 to 728180 14768

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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725,375 + 14767 mRNA_6399 0.72 -1.7
725,812 - -3.0
725,814 - 0.1
725,824 + 0.3
725,830 + -3.2
725,835 - -1.3
725,839 - -1.2
725,978 - -1.2
725,980 - -0.8
726,005 - -0.4
726,013 + -1.7
726,068 - -2.1
726,069 - -0.3
726,095 + 0.4
726,232 - -2.5
726,244 + -4.1
726,386 + -3.3
726,397 + -2.7
726,706 + 14768 mRNA_6400 0.25 -0.3
726,924 + 14768 mRNA_6400 0.36 -2.7
726,962 - 14768 mRNA_6400 0.38 -1.0
727,290 + 14768 mRNA_6400 0.55 -2.2
727,405 + 14768 mRNA_6400 0.61 -2.6
728,018 + -0.0
728,151 + -1.9
728,334 - -4.2