Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6344

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6343: 14711 - K12621 LSM2 U6 snRNA-associated Sm-like protein LSm2, at 590850 to 591445 14711 mRNA_6344: 14712 - KOG3525 Subtilisin-like proprotein convertase, at 592028 to 595751 14712 mRNA_6345: 14713 - HMMPfam-START domain-PF01852,ProSiteProfiles-START domain profile.-PS50848,SUPERFAMILY--SSF55961, at 596038 to 599020 14713

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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591,483 - -2.2
591,488 + -1.2
591,492 + -0.9
591,495 - -1.8
591,495 - 1.3
591,522 - -1.3
591,656 + -1.4
591,693 + -4.0
591,817 - 0.0
591,840 + -0.0
592,034 + 0.7
592,179 + -0.9
592,242 + 1.0
592,816 + 14712 mRNA_6344 0.21 -1.2
593,545 - 14712 mRNA_6344 0.41 -2.0
593,683 + 14712 mRNA_6344 0.44 -0.7
593,841 - 14712 mRNA_6344 0.49 -3.7
593,849 + 14712 mRNA_6344 0.49 0.3
594,254 - 14712 mRNA_6344 0.60 0.4
594,286 - 14712 mRNA_6344 0.61 -0.1
594,411 + 14712 mRNA_6344 0.64 -1.5
594,552 - 14712 mRNA_6344 0.68 1.9
594,879 - 14712 mRNA_6344 0.77 -5.1
595,297 + 14712 mRNA_6344 0.88 -0.3
595,444 - -1.0
595,604 + -3.3
595,605 + -1.3
595,623 + -1.3
596,135 + 0.6