Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6315

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6314: 14682 - K11426 SMYD SET and MYND domain-containing protein, at 525320 to 527665 14682 mRNA_6315: 14683 - K10609 CUL4 cullin 4, at 528215 to 531333 14683 mRNA_6316: 14684 - Hypothetical Protein, at 531577 to 532542 14684

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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527,356 - 14682 mRNA_6314 0.87 -2.9
527,625 + -1.9
527,897 + -1.3
527,902 + -1.8
527,902 - -0.5
527,930 + -3.2
527,943 - -1.2
528,014 + 2.7
528,048 - -0.8
528,227 + -1.7
528,862 + 14683 mRNA_6315 0.21 -3.0
529,826 - 14683 mRNA_6315 0.52 -1.9
530,288 - 14683 mRNA_6315 0.66 -0.6
530,411 + 14683 mRNA_6315 0.70 -2.0
530,730 - 14683 mRNA_6315 0.81 -0.9
530,884 + 14683 mRNA_6315 0.86 -2.6
531,001 - 14683 mRNA_6315 0.89 -2.9
531,177 + -2.0
531,297 - 0.4
531,300 + 0.7
531,315 + -0.7
531,465 + -3.0
531,465 + -2.1
531,466 + -0.1
531,466 + -3.5
531,474 + -2.7
531,482 + -4.1
531,483 - -1.4
531,495 - -2.1
531,637 + -0.9
531,654 + -2.7
531,655 - -0.8
531,775 - 14684 mRNA_6316 0.20 -0.6
531,804 - 14684 mRNA_6316 0.23 -0.1
531,811 + 14684 mRNA_6316 0.24 -1.2
531,819 + 14684 mRNA_6316 0.25 -2.3
531,943 - 14684 mRNA_6316 0.38 -2.3
531,949 - 14684 mRNA_6316 0.39 -1.1
531,965 + 14684 mRNA_6316 0.40 -1.2
531,979 + 14684 mRNA_6316 0.42 -1.0
531,985 + 14684 mRNA_6316 0.42 -2.6
531,986 + 14684 mRNA_6316 0.42 -1.2
532,074 + 14684 mRNA_6316 0.51 2.1
532,091 + 14684 mRNA_6316 0.53 -0.7
532,101 + 14684 mRNA_6316 0.54 -0.0
532,104 - 14684 mRNA_6316 0.55 -2.4
532,105 - 14684 mRNA_6316 0.55 -1.5
532,108 - 14684 mRNA_6316 0.55 -1.7
532,109 + 14684 mRNA_6316 0.55 -1.5
532,121 + 14684 mRNA_6316 0.56 -3.1
532,126 - 14684 mRNA_6316 0.57 -1.5
532,129 + 14684 mRNA_6316 0.57 -1.0
532,172 + 14684 mRNA_6316 0.62 -1.5
532,240 - 14684 mRNA_6316 0.69 -1.7
532,251 - 14684 mRNA_6316 0.70 -1.6
532,251 - 14684 mRNA_6316 0.70 -2.3
532,288 + 14684 mRNA_6316 0.74 -0.9