Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6308

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6307: 14675 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 494501 to 498811 14675 mRNA_6308: 14676 - K09326 OTX1 homeobox protein OTX1, at 499751 to 502382 14676 mRNA_6309: 14677 - BLAST expressed protein [Cryptococcus neoformans var. neofo..., at 502808 to 503552 14677

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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498,878 + -1.0
498,889 - -1.1
498,894 + -2.4
499,024 - -4.2
499,026 - -0.7
499,027 + -1.6
499,031 - -1.5
499,039 + -1.8
499,048 - 0.0
499,050 + -3.0
499,059 + -1.4
499,065 - -5.1
499,100 + 0.2
499,127 + -0.6
499,127 + -1.7
499,129 + -0.0
499,129 - -0.9
499,136 - -2.0
499,139 - -0.7
499,140 + 0.4
499,147 + -3.2
499,152 - -1.0
499,153 - -2.7
499,170 - -1.0
499,174 - 0.6
499,176 - -0.1
499,178 + -0.6
499,179 - -3.2
499,179 + 0.3
499,182 + -2.8
499,183 + -0.7
499,191 - -1.6
499,205 + -1.9
499,220 + 0.0
499,314 - -0.8
499,321 - -1.0
499,323 - -1.4
499,333 - -1.8
499,335 + -2.3
499,338 + -2.3
499,341 - 0.2
499,341 - -0.7
499,342 - -2.8
499,351 + -1.9
499,372 + -0.4
499,482 - -1.5
499,482 - 0.7
499,485 - -1.5
499,486 + 0.6
499,487 - -1.0
499,569 - -2.1
499,625 - -4.0
499,651 - -1.5
499,775 - -0.6
499,933 - -1.7
500,077 + 14676 mRNA_6308 0.12 1.1
500,078 - 14676 mRNA_6308 0.12 -1.7
500,085 + 14676 mRNA_6308 0.13 -0.3
500,092 + 14676 mRNA_6308 0.13 -1.9
501,512 - 14676 mRNA_6308 0.67 -2.7
502,400 + -1.1
502,428 + -1.8
502,507 - -2.9
502,515 + -0.2
502,523 - -0.5
502,526 - -1.6
502,527 - -2.0
502,538 + -3.4
502,540 + -2.2
502,669 + -2.9
502,682 + -0.2
502,690 - 0.6
502,712 + 1.3
502,983 + 14677 mRNA_6309 0.23 -2.8
502,987 - 14677 mRNA_6309 0.24 -2.0
503,007 + 14677 mRNA_6309 0.27 -0.9
503,220 - 14677 mRNA_6309 0.55 -0.7
503,281 - 14677 mRNA_6309 0.63 -1.8