Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6307

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6306: 14674 - K05727 DOCK3 dedicator of cytokinesis protein 3, at 487533 to 494216 14674 mRNA_6307: 14675 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 494501 to 498811 14675 mRNA_6308: 14676 - K09326 OTX1 homeobox protein OTX1, at 499751 to 502382 14676

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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493,554 - -0.8
494,285 - -0.6
494,308 - 0.2
494,415 + -0.3
494,446 - -0.1
494,463 + -2.6
494,591 + -2.9
494,604 - 0.1
494,604 - -0.8
494,613 + -1.6
494,615 - -2.3
494,643 + -2.6
494,755 - -1.5
494,779 - -3.2
494,881 - -1.3
494,893 - -1.4
494,894 + 0.2
494,900 - -1.1
494,909 + -3.2
494,912 - -3.4
494,917 + -1.0
494,930 + -0.1
494,943 - 14675 mRNA_6307 0.10 -0.5
495,071 - 14675 mRNA_6307 0.13 0.5
495,208 - 14675 mRNA_6307 0.16 -3.3
495,913 + 14675 mRNA_6307 0.33 -0.7
496,079 + 14675 mRNA_6307 0.37 -1.3
496,225 + 14675 mRNA_6307 0.40 -2.0
496,380 + 14675 mRNA_6307 0.44 -0.7
496,663 - 14675 mRNA_6307 0.50 -2.6
497,408 - 14675 mRNA_6307 0.67 -3.4
497,569 + 14675 mRNA_6307 0.71 -0.3
497,714 + 14675 mRNA_6307 0.75 -1.3
498,131 + 14675 mRNA_6307 0.84 0.2
498,462 - -0.8
498,572 - -1.1
498,736 + -1.8
498,878 + -1.0
498,889 - -1.1
498,894 + -2.4
499,024 - -4.2
499,026 - -0.7
499,027 + -1.6
499,031 - -1.5
499,039 + -1.8
499,048 - 0.0
499,050 + -3.0
499,059 + -1.4
499,065 - -5.1
499,100 + 0.2
499,127 + -0.6
499,127 + -1.7
499,129 + -0.0
499,129 - -0.9
499,136 - -2.0
499,139 - -0.7
499,140 + 0.4
499,147 + -3.2
499,152 - -1.0
499,153 - -2.7
499,170 - -1.0
499,174 - 0.6
499,176 - -0.1
499,178 + -0.6
499,179 - -3.2
499,179 + 0.3
499,182 + -2.8
499,183 + -0.7
499,191 - -1.6
499,205 + -1.9
499,220 + 0.0
499,314 - -0.8
499,321 - -1.0
499,323 - -1.4
499,333 - -1.8
499,335 + -2.3
499,338 + -2.3
499,341 - 0.2
499,341 - -0.7
499,342 - -2.8
499,351 + -1.9
499,372 + -0.4
499,482 - -1.5
499,482 - 0.7
499,485 - -1.5
499,486 + 0.6
499,487 - -1.0
499,569 - -2.1
499,625 - -4.0
499,651 - -1.5
499,775 - -0.6