Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6306

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6306: 14674 - K05727 DOCK3 dedicator of cytokinesis protein 3, at 487533 to 494216 14674 mRNA_6307: 14675 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 494501 to 498811 14675

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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486,564 - 0.8
486,641 + -0.6
486,657 - 0.7
486,779 - -1.0
486,782 - -2.1
486,812 + -2.8
486,957 + -2.9
486,962 - -1.4
486,963 + 0.0
486,980 - 0.8
486,981 + 0.8
487,111 + -1.5
487,247 - -0.7
487,372 + -2.4
487,561 - -1.9
488,091 + -1.5
488,117 - -1.5
488,124 + -1.1
488,286 - 14674 mRNA_6306 0.11 -1.6
489,269 - 14674 mRNA_6306 0.26 -0.4
489,281 - 14674 mRNA_6306 0.26 -3.2
489,605 - 14674 mRNA_6306 0.31 -0.4
489,721 + 14674 mRNA_6306 0.33 -0.9
489,731 + 14674 mRNA_6306 0.33 -1.9
490,438 - 14674 mRNA_6306 0.43 0.1
490,459 + 14674 mRNA_6306 0.44 -0.7
490,903 - 14674 mRNA_6306 0.50 -4.8
491,341 + 14674 mRNA_6306 0.57 -1.2
491,727 + 14674 mRNA_6306 0.63 1.3
491,730 - 14674 mRNA_6306 0.63 0.3
491,788 + 14674 mRNA_6306 0.64 -0.7
492,952 - 14674 mRNA_6306 0.81 -0.5
493,022 + 14674 mRNA_6306 0.82 -1.8
493,236 + 14674 mRNA_6306 0.85 -0.5
493,554 - -0.8
494,285 - -0.6
494,308 - 0.2
494,415 + -0.3
494,446 - -0.1
494,463 + -2.6
494,591 + -2.9
494,604 - 0.1
494,604 - -0.8
494,613 + -1.6
494,615 - -2.3
494,643 + -2.6
494,755 - -1.5
494,779 - -3.2
494,881 - -1.3
494,893 - -1.4
494,894 + 0.2
494,900 - -1.1
494,909 + -3.2
494,912 - -3.4
494,917 + -1.0
494,930 + -0.1
494,943 - 14675 mRNA_6307 0.10 -0.5
495,071 - 14675 mRNA_6307 0.13 0.5
495,208 - 14675 mRNA_6307 0.16 -3.3