Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6276

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6275: 14643 - BLAST secreted protein [Melampsora larici-populina 98AG31], at 420027 to 422108 14643 mRNA_6276: 14644 - K12615 EDC3 enhancer of mRNA-decapping protein 3, at 422902 to 424921 14644 mRNA_6277: 14645 - KOG2812 Uncharacterized conserved protein, at 425050 to 426717 14645

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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421,911 + -2.4
421,925 + -1.7
422,006 + 0.3
422,031 + -3.1
422,356 - -1.7
422,361 + -2.6
422,377 - -0.7
422,386 - -1.4
422,400 + 0.3
422,484 - -1.6
422,496 - -2.8
422,509 + -2.8
422,511 + -1.2
422,526 - -1.0
422,668 - -2.0
422,671 - -0.5
422,676 - -1.3
422,681 + -1.5
422,684 + -3.7
422,706 + 0.5
422,816 - 0.8
422,816 + -3.3
422,828 + -2.0
422,842 + -4.7
422,845 + -1.3
422,847 + -1.2
422,970 + -0.7
422,972 + -4.1
422,973 - -0.1
422,977 + -0.4
422,979 + -1.2
422,979 + -1.1
422,996 - -2.6
423,117 + 14644 mRNA_6276 0.11 -5.5
423,127 - 14644 mRNA_6276 0.11 -2.7
423,277 + 14644 mRNA_6276 0.19 -2.6
423,575 + 14644 mRNA_6276 0.33 -1.0
423,844 + 14644 mRNA_6276 0.47 -2.4
423,870 + 14644 mRNA_6276 0.48 -1.7
423,985 + 14644 mRNA_6276 0.54 -1.3
424,067 + 14644 mRNA_6276 0.58 -2.8
424,288 + 14644 mRNA_6276 0.69 0.8
424,886 - -2.0
424,897 - -1.9