Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6268

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6267: 14635 - KOG1721 FOG Zn-finger, at 399476 to 403885 14635 mRNA_6268: 14636 - HMMPfam-Survival motor neuron protein (SMN)-PF06003, at 404053 to 405342 14636 mRNA_6269: 14637 - KOG1336 Monodehydroascorbate/ferredoxin reductase, at 405556 to 407019 14637

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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403,180 - 14635 mRNA_6267 0.84 -3.2
403,184 + 14635 mRNA_6267 0.84 -1.5
403,341 + 14635 mRNA_6267 0.88 -2.9
403,477 + -4.1
403,491 + -1.7
403,496 - -1.7
403,517 - -1.4
403,521 - -2.9
403,641 - -2.9
403,663 + -2.8
403,667 - -2.7
403,667 - 1.3
403,673 + -0.9
403,683 + -2.2
403,684 + -2.1
403,699 + -2.0
403,945 - -1.0
403,952 - -2.0
403,967 + -2.0
403,973 + -1.0
403,973 + -2.8
403,982 - -1.3
403,985 - -1.2
403,986 + -0.6
403,986 + -1.6
403,989 + -1.8
403,994 - -1.8
403,995 + -1.3
403,998 + -1.2
403,999 - -0.8
404,000 + -0.7
404,005 + -2.7
404,007 + -1.4
404,013 + -0.3
404,021 + -0.1
404,126 - -1.6
404,133 - -0.3
404,139 - 0.0
404,143 + 0.6
404,159 + -0.8
404,164 - -0.6
404,164 - -2.3
404,288 - 14636 mRNA_6268 0.18 -0.2
404,299 - 14636 mRNA_6268 0.19 0.5
405,337 + -2.2
405,603 + -1.0
405,631 - -2.7
405,763 - 14637 mRNA_6269 0.14 -1.5
405,950 - 14637 mRNA_6269 0.27 -0.7
406,061 - 14637 mRNA_6269 0.34 -0.0
406,229 - 14637 mRNA_6269 0.46 -0.5