Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6259

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6258: 14626 - K01687 ilvD dihydroxy-acid dehydratase, at 371903 to 374480 14626 mRNA_6259: 14627 - HMMPfam-Polysaccharide deacetylase-PF01522,ProSiteProfiles-Prokaryotic membrane lipoprotein lipid attachment site profile.-PS51257,ProSiteProfiles-NodB homology domain profile.-PS51677,SUPERFAMILY--SSF88713, at 374998 to 377098 14627 mRNA_6260: 14628 - HMMPfam-Meiosis protein SPO22/ZIP4 like-PF08631, at 377562 to 381779 14628

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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374,321 + -1.7
374,481 + -0.9
374,488 + -2.6
374,512 + -0.5
374,627 + 0.1
374,628 + -1.1
374,639 + -3.0
374,639 - -2.9
374,647 + -1.5
374,648 - 0.3
374,650 - -3.6
374,668 - -0.3
374,671 - 0.2
374,676 + -3.6
374,676 + -2.0
374,720 + 0.2
374,723 + -0.7
374,724 + -3.0
374,732 + -1.4
374,743 + -2.2
374,835 - 0.3
374,838 + -2.0
374,847 - -0.9
374,861 + -2.2
374,861 + -1.4
374,882 + -1.5
374,892 + -1.8
374,901 - 0.4
374,901 + -3.2
374,911 - 0.0
374,919 + -0.9
374,925 - -2.3
374,925 - 0.3
374,928 + -2.9
374,930 + -1.4
374,932 + -2.7
374,932 + 0.3
374,934 - -4.2
374,934 - -4.7
374,935 + -0.5
374,937 + -2.5
374,937 + -2.4
374,943 + 0.4
374,946 - -0.9
374,947 + -0.1
374,948 + -1.8
374,948 - -4.0
374,951 + -0.3
374,952 + -2.3
374,954 + -1.4
374,957 - -1.7
375,055 + -3.9
375,125 + -3.0
375,393 - 14627 mRNA_6259 0.19 -1.7
375,395 - 14627 mRNA_6259 0.19 -0.7
375,429 + 14627 mRNA_6259 0.21 -1.3
375,489 + 14627 mRNA_6259 0.23 -2.3
375,549 + 14627 mRNA_6259 0.26 0.9
376,003 - 14627 mRNA_6259 0.48 -3.5
376,383 + 14627 mRNA_6259 0.66 -1.8
377,019 - -0.6
377,463 - 0.1
377,929 - 1.3