Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6255

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6254: 14622 - K20477 RGP1 RAB6A-GEF complex partner protein 2, at 361772 to 365441 14622 mRNA_6255: 14623 - K01452 E3.5.1.41 chitin deacetylase, at 365616 to 367386 14623 mRNA_6256: 14624 - Hypothetical Protein, at 367934 to 368444 14624

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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364,640 + 14622 mRNA_6254 0.78 -1.5
364,964 + 14622 mRNA_6254 0.87 -1.5
365,122 - -1.4
365,592 - -0.4
365,837 - 14623 mRNA_6255 0.12 -1.2
366,131 + 14623 mRNA_6255 0.29 1.0
366,274 - 14623 mRNA_6255 0.37 -1.8
366,415 + 14623 mRNA_6255 0.45 -0.5
367,278 + -1.8
367,299 - -0.3
367,567 - 0.2
367,573 + -1.1
367,579 - -1.9
367,709 + -2.7
367,723 - -1.2
367,727 - -1.7
367,730 - -1.7
367,741 - -1.9
367,742 - -2.5
367,864 + 1.0
367,879 - -2.9
367,893 + 1.0
367,910 + -0.6
368,071 + 14624 mRNA_6256 0.27 -1.4
368,201 - 14624 mRNA_6256 0.52 -0.9
368,287 - 14624 mRNA_6256 0.69 -0.2
368,329 - 14624 mRNA_6256 0.77 -0.6
368,360 + 14624 mRNA_6256 0.83 -0.1