Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6243

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6242: 14610 - K00826 E2.6.1.42, ilvE branched-chain amino acid aminotransferase, at 335352 to 337546 14610 mRNA_6243: 14611 - Hypothetical Protein, at 337932 to 340072 14611 mRNA_6244: 14612 - K07901 RAB8A, MEL Ras-related protein Rab-8A, at 340765 to 342148 14612

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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337,073 + 14610 mRNA_6242 0.78 -3.3
337,340 + 0.0
337,646 + 0.9
337,784 - -3.8
338,228 + 14611 mRNA_6243 0.14 0.2
338,399 + 14611 mRNA_6243 0.22 0.0
338,816 + 14611 mRNA_6243 0.41 -0.8
339,126 + 14611 mRNA_6243 0.56 -0.7
339,238 - 14611 mRNA_6243 0.61 -0.6
339,246 - 14611 mRNA_6243 0.61 -2.2
339,247 - 14611 mRNA_6243 0.61 -3.1
339,682 + 14611 mRNA_6243 0.82 1.3
339,708 + 14611 mRNA_6243 0.83 -2.1
339,846 + 14611 mRNA_6243 0.89 -1.0
339,858 + 14611 mRNA_6243 0.90 0.6
339,861 - -0.3
339,992 + -0.4
339,998 + 1.2
340,150 + -0.4
340,297 - -0.4
340,298 + -1.5
340,307 + -2.7
340,308 - -1.4
340,421 - 0.2
340,453 - -2.1
340,557 - -2.6
340,566 - -2.4
340,573 + -0.4
340,584 + -2.2
340,588 + -1.8
340,588 - -0.0
340,691 + -0.6
340,693 - -1.4
340,741 - -1.8