Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6234

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6234: 14602 - K00318 PRODH proline dehydrogenase, at 315731 to 317718 14602 mRNA_6235: 14603 - K17279 REEP5_6 receptor expression-enhancing protein 5/6, at 318135 to 318876 14603

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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315,055 - 0.6
315,070 + 0.1
315,070 + 0.3
315,335 + -1.5
315,342 - -2.0
315,345 - 0.4
315,346 + -2.4
315,346 + -1.0
315,372 - -1.5
315,381 - -3.7
315,385 - -0.7
315,486 + -2.0
315,517 + 1.4
315,527 + -2.0
315,539 + -2.5
315,578 - -2.0
315,638 - -0.3
315,652 - -0.9
315,656 - 0.7
315,662 + -2.9
315,665 + -4.6
315,665 - -0.6
315,667 - -1.3
315,670 + -2.5
315,671 + -1.6
315,673 + -0.9
315,673 + -2.3
315,676 + -0.6
315,686 - -0.7
315,939 - 14602 mRNA_6234 0.10 -1.6
315,967 + 14602 mRNA_6234 0.12 -3.0
315,986 + 14602 mRNA_6234 0.13 0.5
316,121 + 14602 mRNA_6234 0.20 0.1
316,392 - 14602 mRNA_6234 0.33 -1.1
316,418 + 14602 mRNA_6234 0.35 -3.6
316,850 - 14602 mRNA_6234 0.56 -3.6
316,874 + 14602 mRNA_6234 0.57 -0.9
316,880 + 14602 mRNA_6234 0.58 -2.5
317,036 - 14602 mRNA_6234 0.66 -1.5
317,036 - 14602 mRNA_6234 0.66 -2.6
317,601 + -1.8
317,770 - -1.2