Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6190

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6189: 14557 - ProSiteProfiles-Tyrosine specific protein phosphatases family profile.-PS50056,SUPERFAMILY--SSF52799, at 212357 to 214481 14557 mRNA_6190: 14558 - HMMPfam-Permease for cytosine/purines, uracil, thiamine, allantoin-PF02133,PIRSF--PIRSF002744, at 215040 to 217246 14558 mRNA_6191: 14559 - K01485 codA cytosine deaminase, at 218019 to 218832 14559

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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214,103 + 14557 mRNA_6189 0.82 -1.9
214,568 + -0.8
214,607 + 1.1
214,702 - -1.4
214,719 + 0.1
214,726 - -0.8
214,733 + -1.7
214,889 - -2.1
214,906 - -0.9
215,201 + 0.2
215,596 + 14558 mRNA_6190 0.25 0.0
215,619 + 14558 mRNA_6190 0.26 -3.9
215,755 - 14558 mRNA_6190 0.32 -3.5
215,816 + 14558 mRNA_6190 0.35 -2.4
216,017 + 14558 mRNA_6190 0.44 -1.8
216,042 + 14558 mRNA_6190 0.45 -1.8
216,190 - 14558 mRNA_6190 0.52 -1.2
216,331 - 14558 mRNA_6190 0.58 -1.6
216,335 - 14558 mRNA_6190 0.59 -4.0
216,752 - 14558 mRNA_6190 0.78 -0.8
216,782 + 14558 mRNA_6190 0.79 0.0
216,937 + 14558 mRNA_6190 0.86 -2.1
217,049 - -0.1
217,056 + 0.5
217,057 + 0.2
217,058 - -3.0
217,065 - 0.2
217,071 + -2.1
217,209 + 0.7
217,210 + -2.5
217,220 + -0.2
217,236 - 0.1
217,345 - -1.5
217,351 - -1.8
217,352 + -2.7
217,352 - -0.4
217,363 - -1.5
217,363 - 0.3
217,365 - -1.4
217,366 + -0.8
217,367 - -0.7
217,369 - 1.1
217,370 + -0.8
217,372 - 0.0
217,372 + 0.2
217,372 - -2.5
217,383 + -3.0
217,385 + -2.5
217,390 - -1.8
217,391 + -2.3
217,392 + -2.0
217,392 + -1.5
217,396 - -0.8
217,398 - -2.6
217,408 + 0.3
217,429 - -2.2
217,441 + -1.7
217,460 - -0.8
217,465 + -0.7
217,488 + -2.8
217,549 - -0.5
217,572 + -1.7
217,575 - -3.4
217,594 - -1.0
217,605 + -0.8
217,620 + 0.2
217,623 - -1.5
217,625 - -1.5
217,626 + -0.6
217,628 - -2.2
217,630 - -2.6
217,631 + 0.1
217,633 + -2.1
217,634 + -0.9
217,638 - -0.5
217,639 - -1.3
217,646 - -1.3
217,653 + -1.4
217,655 + -2.3
217,662 - -0.5
217,677 - -0.2
217,694 - -2.2
217,695 + -1.6
217,696 + -2.6
217,706 + 0.4
217,707 + -2.3
217,721 + 0.3
217,739 + -2.1
217,750 + -4.6
217,772 + -2.1
217,777 + -1.4
217,778 + -2.6
217,787 + -1.7
217,801 + -2.1
217,801 + -0.9
217,808 + -3.9
217,818 + -2.1
217,822 - -1.3
217,823 + -1.4
217,823 - -0.6
217,824 + -0.8
217,825 - 0.1
217,825 - -1.1
217,825 + -1.7
217,832 + 1.4
217,833 + -1.9
217,835 + -1.5
217,837 + -0.5
217,841 + -1.7
217,842 + -1.6
217,848 - -4.1
217,851 + -0.0
217,855 - -1.7
217,859 + -3.4
217,874 + -0.5
217,985 + -0.8
217,995 + -0.4
218,006 + 0.1
218,011 - -0.5
218,152 + 14559 mRNA_6191 0.16 -1.5
218,164 + 14559 mRNA_6191 0.18 -1.4