Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6166

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6165: 14533 - HMMPfam-WD domain, G-beta repeat-PF00400,HMMPfam-F-box-like-PF12937,SMART-A Receptor for Ubiquitination Targets-SM00256,SUPERFAMILY--SSF50978,SUPERFAMILY--SSF81383, at 151697 to 155852 14533 mRNA_6166: 14534 - Hypothetical Protein, at 156004 to 157222 14534 mRNA_6167: 14535 - K11672 ACTR5, ARP5, INO80M actin-related protein 5, at 157768 to 160667 14535

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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155,074 - 14533 mRNA_6165 0.81 1.2
155,074 - 14533 mRNA_6165 0.81 -2.1
155,128 - 14533 mRNA_6165 0.83 -0.0
155,185 - 14533 mRNA_6165 0.84 0.3
155,224 - 14533 mRNA_6165 0.85 0.1
155,226 + 14533 mRNA_6165 0.85 0.0
155,337 - 14533 mRNA_6165 0.88 -0.4
155,504 + -0.2
155,627 + -1.9
155,645 - -1.7
155,652 + -0.4
155,661 - -1.7
155,822 + -2.9
155,823 + -1.7
155,832 + -1.9
155,926 - -1.0
155,926 - -0.2
155,931 - -0.2
155,956 + -0.8
155,960 - -0.6
155,970 - -0.7
156,148 + 14534 mRNA_6166 0.12 -2.2
156,252 - 14534 mRNA_6166 0.20 -1.6
156,729 - 14534 mRNA_6166 0.59 -2.7
156,832 - 14534 mRNA_6166 0.68 -0.6
156,935 - 14534 mRNA_6166 0.76 -2.6
156,975 - 14534 mRNA_6166 0.80 -0.3
157,097 - 14534 mRNA_6166 0.90 -0.8
157,257 + -2.0
157,547 - -2.5
157,681 - -0.5
157,784 + -2.2