Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6135

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6134: 14502 - KOG1477 SPRY domain-containing proteins, at 88060 to 89781 14502 mRNA_6135: 14503 - K08614 ADAM28 disintegrin and metalloproteinase domain-containing protein 28, at 90272 to 93233 14503 mRNA_6136: 14504 - Hypothetical Protein, at 93449 to 95989 14504

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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89,730 - -0.2
89,849 - -1.8
89,992 + -0.5
89,995 - -1.5
90,043 - 0.5
90,163 + -1.2
90,176 - 1.7
90,196 - -0.3
90,309 + -0.3
90,310 - -2.3
90,317 - -0.6
90,326 + -1.1
90,341 - -2.0
90,476 - -1.0
90,495 + -0.1
90,524 + -2.6
90,620 + 14503 mRNA_6135 0.12 0.8
90,622 - 14503 mRNA_6135 0.12 1.0
90,667 - 14503 mRNA_6135 0.13 -0.4
90,765 - 14503 mRNA_6135 0.17 0.1
90,782 - 14503 mRNA_6135 0.17 -1.7
90,901 - 14503 mRNA_6135 0.21 -1.7
91,077 - 14503 mRNA_6135 0.27 -0.6
91,396 - 14503 mRNA_6135 0.38 -1.7
91,804 + 14503 mRNA_6135 0.52 1.0
92,224 + 14503 mRNA_6135 0.66 -2.4
92,506 - 14503 mRNA_6135 0.75 -2.1
92,511 + 14503 mRNA_6135 0.76 0.6
92,540 - 14503 mRNA_6135 0.77 0.4
92,694 - 14503 mRNA_6135 0.82 0.5
92,820 + 14503 mRNA_6135 0.86 -1.4
93,147 + -1.0
93,225 + -0.4
93,266 + -1.3
93,286 - 0.1
93,575 + 0.6
93,832 + 14504 mRNA_6136 0.15 0.5
94,179 + 14504 mRNA_6136 0.29 -1.3