Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6113

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6112: 14480 - K01785 galM, GALM aldose 1-epimerase, at 17714 to 19844 14480 mRNA_6113: 14481 - K17263 CAND1 cullin-associated NEDD8-dissociated protein 1, at 19972 to 24805 14481 mRNA_6114: 14482 - Hypothetical Protein, at 25220 to 26095 14482

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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19,160 + 14480 mRNA_6112 0.68 -1.9
19,160 + 14480 mRNA_6112 0.68 -0.3
19,242 + 14480 mRNA_6112 0.72 -2.3
19,332 - 14480 mRNA_6112 0.76 -1.6
19,368 + 14480 mRNA_6112 0.78 -1.1
19,396 + 14480 mRNA_6112 0.79 0.2
19,505 + 14480 mRNA_6112 0.84 -2.4
19,511 + 14480 mRNA_6112 0.84 -2.0
19,589 - 14480 mRNA_6112 0.88 0.2
19,615 - 14480 mRNA_6112 0.89 -0.8
19,762 - -3.6
19,763 + -0.7
19,767 - 1.3
19,778 - -4.2
19,789 + 0.4
19,796 + -0.1
19,916 - 0.3
19,922 + -2.9
19,926 + -0.7
19,930 + -1.8
19,932 + -0.6
19,946 + -1.9
20,080 + -0.5
20,205 - -1.0
20,470 + 14481 mRNA_6113 0.10 -2.3
20,606 - 14481 mRNA_6113 0.13 -1.8
20,828 - 14481 mRNA_6113 0.18 -0.8
21,984 + 14481 mRNA_6113 0.42 0.6
22,046 + 14481 mRNA_6113 0.43 -0.3
22,179 + 14481 mRNA_6113 0.46 -1.3
22,314 + 14481 mRNA_6113 0.48 -1.0
22,478 + 14481 mRNA_6113 0.52 -1.8
22,533 + 14481 mRNA_6113 0.53 -0.8
22,680 - 14481 mRNA_6113 0.56 -1.0
22,881 - 14481 mRNA_6113 0.60 -2.7
22,887 + 14481 mRNA_6113 0.60 -0.1
22,887 + 14481 mRNA_6113 0.60 0.7
22,985 - 14481 mRNA_6113 0.62 0.0
23,003 - 14481 mRNA_6113 0.63 -2.0
23,010 - 14481 mRNA_6113 0.63 0.5
23,010 - 14481 mRNA_6113 0.63 -1.1
23,010 - 14481 mRNA_6113 0.63 -0.6
23,015 - 14481 mRNA_6113 0.63 -1.1
23,016 + 14481 mRNA_6113 0.63 2.5
23,017 - 14481 mRNA_6113 0.63 -0.1
23,301 + 14481 mRNA_6113 0.69 -2.5
23,310 - 14481 mRNA_6113 0.69 -1.1
23,594 - 14481 mRNA_6113 0.75 -0.5
23,673 + 14481 mRNA_6113 0.77 1.0
23,769 + 14481 mRNA_6113 0.79 -0.0
23,770 + 14481 mRNA_6113 0.79 -1.4
23,937 - 14481 mRNA_6113 0.82 -2.2
24,044 - 14481 mRNA_6113 0.84 -1.7
24,083 + 14481 mRNA_6113 0.85 -1.8
24,160 + 14481 mRNA_6113 0.87 -1.6
24,221 - 14481 mRNA_6113 0.88 -1.5
24,280 + 14481 mRNA_6113 0.89 -0.3
24,283 - 14481 mRNA_6113 0.89 -1.7
24,327 + -0.8
24,337 - 0.1
24,337 - 0.4
24,344 + 0.3
24,392 - -0.5
24,441 + -0.9
24,495 - -2.0
24,552 - -2.6
24,555 + -1.0
24,639 + -2.4
24,665 - -1.8
24,666 - -1.6
24,805 + -3.6
25,098 + -0.9
25,124 - 0.2
25,227 + -0.7
25,495 + 14482 mRNA_6114 0.31 -2.9
25,675 + 14482 mRNA_6114 0.52 -2.1
25,801 - 14482 mRNA_6114 0.66 -1.7