Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6106

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6106: 14474 - K08332 VAC8 vacuolar protein 8, at 223 to 3658 14474 mRNA_6107: 14475 - K14401 CPSF1, CFT1 cleavage and polyadenylation specificity factor subunit 1, at 3990 to 10005 14475

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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39 + 0.8
39 + 0.2
40 + -2.9
40 + -2.6
40 + -2.3
41 + -0.9
56 + -0.9
56 + -0.1
56 + -0.2
58 + -2.5
59 + -2.0
59 + -0.5
62 - -2.3
65 - -2.9
77 + -2.0
84 + -1.3
102 + -4.1
137 + -3.1
151 + 0.1
200 + -0.6
208 + -1.7
216 + -0.7
229 + -0.4
348 - -2.2
430 + -3.3
498 - -1.0
502 - 1.7
685 + 14474 mRNA_6106 0.13 -0.9
747 + 14474 mRNA_6106 0.15 -2.8
755 + 14474 mRNA_6106 0.15 -1.3
946 + 14474 mRNA_6106 0.21 -1.9
975 + 14474 mRNA_6106 0.22 -1.8
1,245 + 14474 mRNA_6106 0.30 -0.5
2,125 + 14474 mRNA_6106 0.55 0.8
2,839 - 14474 mRNA_6106 0.76 -0.2
3,125 - 14474 mRNA_6106 0.84 1.3
3,248 - 14474 mRNA_6106 0.88 -0.0
3,570 + -1.8
3,665 + 0.4
3,692 + -0.5
3,706 + -2.2
3,726 + -0.4
3,820 + 0.7
3,853 + 1.2
3,859 + -0.0
3,909 - -3.5
3,929 - -2.0