Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6068

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6067: 14435 - K14798 LTV1 protein LTV1, at 1562800 to 1564980 14435 mRNA_6068: 14436 - K01855 PUS3, DEG1 tRNA pseudouridine38/39 synthase, at 1565230 to 1567371 14436 mRNA_6069: 14437 - KOG0198 MEKK and related serine/threonine protein kinases, at 1567592 to 1572715 14437

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,565,097 + -1.7
1,565,195 - 0.7
1,565,250 + 1.2
1,565,560 - 14436 mRNA_6068 0.15 -2.7
1,566,121 - 14436 mRNA_6068 0.42 -3.6
1,566,559 - 14436 mRNA_6068 0.62 0.5
1,566,776 + 14436 mRNA_6068 0.72 -0.6
1,567,266 - -1.8
1,567,438 - -1.3
1,567,752 - -2.1
1,567,864 - -0.8
1,567,960 + -1.8
1,568,030 + -2.7
1,568,120 - 14437 mRNA_6069 0.10 2.1
1,568,150 - 14437 mRNA_6069 0.11 -0.1
1,568,332 + 14437 mRNA_6069 0.14 -2.8