Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6023

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6022: 14390 - SUPERFAMILY--SSF52047, at 1468508 to 1469944 14390 mRNA_6023: 14391 - K03293 TC.AAT amino acid transporter, AAT family, at 1470254 to 1472430 14391 mRNA_6024: 14392 - Hypothetical Protein, at 1472719 to 1473425 14392

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,469,733 + 14390 mRNA_6022 0.85 -1.6
1,469,745 + 14390 mRNA_6022 0.86 -0.5
1,469,834 + -0.3
1,469,915 + -1.3
1,469,977 + -3.3
1,469,984 + -0.6
1,469,988 - 1.4
1,470,093 - -0.2
1,470,107 - -1.4
1,470,157 - 0.5
1,470,158 + -3.0
1,470,161 - -1.4
1,470,169 + -1.7
1,470,172 + -1.7
1,470,175 + -1.1
1,470,191 - -2.7
1,470,212 + -1.6
1,470,227 - -1.1
1,470,301 - -0.9
1,470,374 + -0.4
1,470,387 + -4.3
1,470,394 - -0.9
1,470,452 - -2.3
1,470,486 + 14391 mRNA_6023 0.11 -2.6
1,471,389 + 14391 mRNA_6023 0.52 0.5
1,471,391 - 14391 mRNA_6023 0.52 -0.9
1,471,398 + 14391 mRNA_6023 0.53 0.3
1,471,441 - 14391 mRNA_6023 0.55 -2.9
1,471,457 - 14391 mRNA_6023 0.55 -0.1
1,472,077 - 14391 mRNA_6023 0.84 1.8
1,472,234 + -2.1
1,472,624 + -0.8
1,472,626 - -0.8
1,472,629 + -0.9
1,472,732 + -0.2
1,472,800 - 14392 mRNA_6024 0.11 -0.2
1,472,819 + 14392 mRNA_6024 0.14 -0.5
1,472,926 + 14392 mRNA_6024 0.29 -2.6
1,472,946 + 14392 mRNA_6024 0.32 -3.5
1,472,951 + 14392 mRNA_6024 0.33 -1.6
1,472,967 + 14392 mRNA_6024 0.35 -0.0