Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6002

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6001: 14369 - KOG1575 Voltage-gated shaker-like K+ channel, subunit beta/KCNAB, at 1426118 to 1427755 14369 mRNA_6002: 14370 - KOG4178 Soluble epoxide hydrolase, at 1428080 to 1429229 14370 mRNA_6003: 14371 - K14792 RRP5, PDCD11 rRNA biogenesis protein RRP5, at 1429662 to 1434924 14371

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,427,114 - 14369 mRNA_6001 0.61 0.5
1,427,329 + 14369 mRNA_6001 0.74 -1.6
1,427,395 + 14369 mRNA_6001 0.78 -2.8
1,427,419 - 14369 mRNA_6001 0.79 -1.2
1,427,502 - 14369 mRNA_6001 0.84 -1.1
1,427,520 + 14369 mRNA_6001 0.86 -0.7
1,427,556 + 14369 mRNA_6001 0.88 -2.1
1,427,632 - -2.6
1,427,685 - -2.5
1,427,686 - 0.1
1,427,687 - -1.3
1,427,691 - -3.9
1,427,694 + -1.5
1,427,783 - -1.9
1,427,832 + -2.7
1,427,854 + -0.9
1,427,970 - -3.3
1,427,974 - -1.2
1,427,979 + -0.7
1,428,125 - 0.3
1,428,128 + -2.5
1,428,132 + -2.2
1,428,294 + 14370 mRNA_6002 0.19 -2.0
1,428,447 + 14370 mRNA_6002 0.32 -1.6
1,428,576 + 14370 mRNA_6002 0.43 -0.6
1,428,716 - 14370 mRNA_6002 0.55 -2.7
1,428,854 - 14370 mRNA_6002 0.67 -1.2
1,428,905 + 14370 mRNA_6002 0.72 -0.7
1,429,017 - 14370 mRNA_6002 0.81 -0.6
1,429,158 + 0.2
1,429,294 - -1.6
1,429,295 + -1.8
1,429,307 - -3.2
1,429,307 - 0.2
1,429,313 - -0.7
1,429,324 + -0.4
1,429,330 - 0.2
1,429,379 - -2.0
1,429,383 + -2.0
1,429,447 - -2.8
1,429,453 + -2.4
1,429,461 + -1.3
1,429,463 - -1.6
1,429,468 + -2.8
1,429,580 - -2.4
1,429,584 + -2.9