Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5962

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5961: 14329 - HMMPfam-F-box-like-PF12937, at 1338459 to 1339688 14329 mRNA_5962: 14330 - Hypothetical Protein, at 1340346 to 1341615 14330 mRNA_5963: 14331 - Interpro F-box-like, at 1342059 to 1343538 14331

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,339,357 - 14329 mRNA_5961 0.73 -1.8
1,339,671 - -1.0
1,339,683 - 1.5
1,339,684 + -1.1
1,339,788 - -0.4
1,339,792 - 0.8
1,339,925 + -1.8
1,339,925 + -0.6
1,339,952 - -0.3
1,339,954 + -1.3
1,339,967 + -1.4
1,339,967 + -2.2
1,340,027 - -3.5
1,340,047 + -0.3
1,340,250 + -1.9
1,340,423 - -0.4
1,340,721 + 14330 mRNA_5962 0.30 -1.3
1,340,980 + 14330 mRNA_5962 0.50 -0.7
1,340,982 + 14330 mRNA_5962 0.50 -1.7
1,340,995 - 14330 mRNA_5962 0.51 -2.5
1,341,002 + 14330 mRNA_5962 0.52 -1.4
1,341,126 - 14330 mRNA_5962 0.61 -2.6
1,341,206 + 14330 mRNA_5962 0.68 0.0
1,341,405 - 14330 mRNA_5962 0.83 -1.7
1,341,419 + 14330 mRNA_5962 0.84 -0.6
1,341,423 + 14330 mRNA_5962 0.85 -0.7
1,341,519 - -1.1
1,341,553 - -1.3
1,341,555 + -1.2
1,341,590 + -0.3
1,341,591 + -2.5
1,341,698 - -0.7
1,341,862 + -1.9
1,341,870 + -0.7
1,341,881 + -1.9
1,341,981 - -3.1
1,341,987 + -1.0
1,342,008 - -0.0
1,342,271 + 14331 mRNA_5963 0.14 -0.2
1,342,427 - 14331 mRNA_5963 0.25 -4.4
1,342,456 - 14331 mRNA_5963 0.27 -0.6
1,342,539 + 14331 mRNA_5963 0.32 0.1