Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5958

Experiments: 40 hrs No Buoyancy Separation

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5957: 14325 - HMMPfam-Eukaryotic cytochrome b561-PF03188,ProSiteProfiles-Cytochrome b561 domain profile.-PS50939,SMART-Cytochrome b-561 / ferric reductase transmembrane domain.-SM00665,SUPERFAMILY--SSF49344, at 1329239 to 1331004 14325 mRNA_5958: 14326 - KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily), at 1331460 to 1334052 14326 mRNA_5959: 14327 - HMMPfam-Domain of unknown function (DUF1793)-PF08760, at 1334549 to 1337487 14327

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
remove
1,330,493 + 14325 mRNA_5957 0.71 0.3
1,330,522 + 14325 mRNA_5957 0.73 -2.2
1,330,655 - 14325 mRNA_5957 0.80 -1.2
1,331,405 + -0.0
1,331,411 + -3.2
1,331,780 + 14326 mRNA_5958 0.12 -0.9
1,331,965 - 14326 mRNA_5958 0.19 -2.9
1,332,084 + 14326 mRNA_5958 0.24 0.0
1,332,419 - 14326 mRNA_5958 0.37 -1.0
1,332,696 - 14326 mRNA_5958 0.48 -0.8
1,333,256 + 14326 mRNA_5958 0.69 -0.9
1,333,383 + 14326 mRNA_5958 0.74 -0.4
1,333,414 + 14326 mRNA_5958 0.75 -1.4
1,333,627 - 14326 mRNA_5958 0.84 -2.0
1,333,690 + 14326 mRNA_5958 0.86 -0.6
1,333,698 + 14326 mRNA_5958 0.86 -2.0
1,333,728 - 14326 mRNA_5958 0.87 -2.5
1,333,735 - 14326 mRNA_5958 0.88 1.2
1,333,825 + 0.1
1,333,841 + -3.3
1,333,874 + -1.9
1,333,876 - -2.5
1,333,880 - -3.1
1,333,889 + -3.2
1,333,934 + -2.9
1,333,939 - -3.1
1,333,949 + -1.7
1,334,032 - -2.7
1,334,042 - -0.5
1,334,043 - -1.0
1,334,045 - -0.7
1,334,082 - -2.3
1,334,083 + 1.6
1,334,125 + -1.9
1,334,152 - 0.1
1,334,206 - -2.5
1,334,295 - 0.3
1,334,319 + 0.3
1,334,323 + -0.2
1,334,345 - -1.5
1,334,364 + -1.8
1,334,365 + -0.5
1,334,387 - -0.6
1,334,451 - 0.1
1,334,452 - -1.7
1,334,453 + -0.3
1,334,475 + 0.1
1,334,488 + -0.7
1,334,502 - -1.5
1,334,527 + 0.5
1,334,529 + -1.2
1,334,811 + -0.5
1,334,818 + -0.0
1,334,921 + 14327 mRNA_5959 0.13 0.5
1,334,991 - 14327 mRNA_5959 0.15 -0.6