Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5947

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5946: 14314 - Hypothetical Protein, at 1296750 to 1297889 14314 mRNA_5947: 14315 - KOG1001 Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily, at 1298029 to 1303055 14315 mRNA_5948: 14316 - HMMPfam-Zinc finger C-x8-C-x5-C-x3-H type-PF14608,ProSiteProfiles-Zinc finger C3H1-type profile.-PS50103,SMART-zinc finger-SM00356, at 1303532 to 1306602 14316

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,297,088 + 14314 mRNA_5946 0.30 -1.4
1,297,090 - 14314 mRNA_5946 0.30 -1.7
1,297,100 + 14314 mRNA_5946 0.31 -2.2
1,297,251 - 14314 mRNA_5946 0.44 -0.3
1,297,261 + 14314 mRNA_5946 0.45 0.5
1,297,272 - 14314 mRNA_5946 0.46 -3.1
1,297,365 - 14314 mRNA_5946 0.54 0.5
1,297,531 - 14314 mRNA_5946 0.69 -1.1
1,297,664 + 14314 mRNA_5946 0.80 -0.2
1,297,681 + 14314 mRNA_5946 0.82 -1.6
1,297,845 - -1.2
1,297,973 + 0.0
1,297,987 - -2.3
1,298,243 - 0.8
1,298,299 + -0.8
1,298,435 + -0.8
1,298,444 + 0.2
1,301,382 - 14315 mRNA_5947 0.67 -1.3
1,301,532 - 14315 mRNA_5947 0.70 -0.9
1,302,519 - 14315 mRNA_5947 0.89 -0.3
1,303,239 + -1.1