Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5905

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5904: 14272 - KOG4234 TPR repeat-containing protein, at 1211111 to 1212389 14272 mRNA_5905: 14273 - KOG1947 Leucine rich repeat proteins, some proteins contain F-box, at 1212592 to 1214577 14273 mRNA_5906: 14274 - KOG2568 Predicted membrane protein, at 1214923 to 1217024 14274

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,211,965 + 14272 mRNA_5904 0.67 -0.9
1,211,981 + 14272 mRNA_5904 0.68 0.0
1,212,276 + -0.6
1,212,292 + -0.9
1,212,385 - -0.8
1,212,405 - 1.0
1,212,549 - -1.4
1,212,577 + -1.9
1,212,673 - 0.0
1,212,815 - 14273 mRNA_5905 0.11 -0.1
1,212,836 - 14273 mRNA_5905 0.12 0.0
1,212,978 - 14273 mRNA_5905 0.19 -1.7
1,213,125 + 14273 mRNA_5905 0.27 -0.9
1,213,202 + 14273 mRNA_5905 0.31 -3.5
1,213,401 + 14273 mRNA_5905 0.41 -0.2
1,213,427 + 14273 mRNA_5905 0.42 -2.1
1,213,583 - 14273 mRNA_5905 0.50 -0.5
1,213,892 - 14273 mRNA_5905 0.65 -0.4
1,214,140 - 14273 mRNA_5905 0.78 -2.6
1,214,172 - 14273 mRNA_5905 0.80 -3.2
1,214,292 - 14273 mRNA_5905 0.86 -1.3
1,214,436 + -1.4
1,214,574 + -3.3
1,214,730 + -0.6
1,214,736 + -0.1
1,214,749 - -0.3
1,215,033 - 0.2
1,215,058 - -0.3
1,215,187 - 14274 mRNA_5906 0.13 -0.7
1,215,193 - 14274 mRNA_5906 0.13 -1.8
1,215,322 - 14274 mRNA_5906 0.19 0.2
1,215,364 - 14274 mRNA_5906 0.21 -0.9