Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5878

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5877: 14245 - K00624 E2.3.1.7 carnitine O-acetyltransferase, at 1144379 to 1146733 14245 mRNA_5878: 14246 - KOG4210 Nuclear localization sequence binding protein, at 1146916 to 1148820 14246 mRNA_5879: 14247 - KOG2624 Triglyceride lipase-cholesterol esterase, at 1149162 to 1152280 14247

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,145,969 - 14245 mRNA_5877 0.68 -1.3
1,146,096 + 14245 mRNA_5877 0.73 -0.7
1,146,142 + 14245 mRNA_5877 0.75 -1.9
1,146,313 - 14245 mRNA_5877 0.82 -1.2
1,146,388 + 14245 mRNA_5877 0.85 -1.5
1,146,448 + 14245 mRNA_5877 0.88 -0.2
1,146,523 - -0.3
1,146,654 + -1.6
1,146,668 - -0.2
1,146,703 + 0.1
1,146,722 - -0.2
1,146,847 + -0.5
1,147,262 - 14246 mRNA_5878 0.18 0.1
1,147,574 - 14246 mRNA_5878 0.35 -0.2
1,147,850 + 14246 mRNA_5878 0.49 -1.4
1,148,852 + -1.9
1,148,854 + -1.6
1,148,912 + -0.2
1,148,918 - 0.9
1,148,928 - 0.1
1,148,928 + -1.6
1,148,939 + -0.2
1,148,940 - -0.5
1,148,942 + -2.9
1,148,942 + -2.2
1,148,947 - -1.6
1,148,948 - -2.1
1,148,949 - -0.2
1,148,957 + -0.7
1,148,957 - -0.6
1,148,987 + -2.2
1,149,088 - -2.2
1,149,107 - -2.0
1,149,108 + -2.2
1,149,114 - -2.2
1,149,137 - 0.0
1,149,141 - -2.3
1,149,151 - -0.5
1,149,151 - -0.9
1,149,153 - -0.9
1,149,182 - -0.3
1,149,290 - -0.6
1,149,309 + -1.1
1,149,441 + -1.4
1,149,474 + 14247 mRNA_5879 0.10 -0.9
1,149,606 + 14247 mRNA_5879 0.14 -2.3
1,149,701 - 14247 mRNA_5879 0.17 -0.4
1,149,720 - 14247 mRNA_5879 0.18 -5.2