Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5871

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5870: 14238 - Hypothetical Protein, at 1126742 to 1127263 14238 mRNA_5871: 14239 - HMMPfam-zinc finger of C3HC4-type, RING-PF15227,ProSitePatterns-Zinc finger RING-type signature.-PS00518,ProSiteProfiles-Zinc finger RING-type profile.-PS50089,SMART-Ring finger-SM00184,SUPERFAMILY--SSF57850, at 1127844 to 1131373 14239 mRNA_5872: 14240 - HMMPfam-Pleckstrin homology domain-PF15404,SMART-Pleckstrin homology domain.-SM00233, at 1131493 to 1135652 14240

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,126,967 - 14238 mRNA_5870 0.43 -1.4
1,126,972 - 14238 mRNA_5870 0.44 0.1
1,127,106 - 14238 mRNA_5870 0.70 0.4
1,127,114 - 14238 mRNA_5870 0.71 -0.7
1,127,143 - 14238 mRNA_5870 0.77 -0.6
1,127,145 + 14238 mRNA_5870 0.77 -2.0
1,127,699 - -0.6
1,127,726 + -2.1
1,127,875 - 1.3
1,128,410 - 14239 mRNA_5871 0.16 -0.0
1,128,594 - 14239 mRNA_5871 0.21 -0.7
1,128,609 - 14239 mRNA_5871 0.22 -0.2
1,128,613 + 14239 mRNA_5871 0.22 0.6
1,129,238 - 14239 mRNA_5871 0.39 0.2
1,129,390 - 14239 mRNA_5871 0.44 0.9
1,129,402 - 14239 mRNA_5871 0.44 -1.0
1,129,844 + 14239 mRNA_5871 0.57 -1.8
1,130,132 - 14239 mRNA_5871 0.65 -2.6
1,130,136 + 14239 mRNA_5871 0.65 0.4
1,130,731 - 14239 mRNA_5871 0.82 -2.3
1,130,881 + 14239 mRNA_5871 0.86 0.4
1,130,888 - 14239 mRNA_5871 0.86 -2.8
1,131,032 + -0.8
1,131,043 + -0.4
1,131,444 - -1.1
1,131,444 - -2.7
1,131,508 + -1.7
1,131,781 - -2.3
1,131,801 + -1.3
1,131,908 - -0.8
1,131,940 + 14240 mRNA_5872 0.11 -2.2
1,131,941 + 14240 mRNA_5872 0.11 -0.2