Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5863

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5862: 14230 - K14998 SURF1, SHY1 surfeit locus 1 family protein, at 1110574 to 1111803 14230 mRNA_5863: 14231 - K09281 K09281 copper-fist transcription factor, at 1112014 to 1113676 14231 mRNA_5864: 14232 - K01322 PREP prolyl oligopeptidase, at 1113887 to 1116821 14232

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,111,090 + 14230 mRNA_5862 0.42 1.8
1,111,360 + 14230 mRNA_5862 0.64 -2.2
1,111,634 - 14230 mRNA_5862 0.86 0.8
1,112,077 + -1.0
1,112,234 + 14231 mRNA_5863 0.13 -2.9
1,112,545 + 14231 mRNA_5863 0.32 -2.1
1,112,823 + 14231 mRNA_5863 0.49 -2.1
1,113,674 + -3.0
1,113,690 + 0.3
1,113,838 - -0.7
1,113,857 + -1.1
1,113,968 - -1.4
1,113,977 + 0.5
1,114,138 - -0.2
1,114,146 - -1.4
1,114,158 - -0.5
1,114,163 + -1.9
1,114,168 - -1.8
1,114,185 - 14232 mRNA_5864 0.10 -1.3
1,114,276 - 14232 mRNA_5864 0.13 -1.1
1,114,308 - 14232 mRNA_5864 0.14 -0.3
1,114,366 - 14232 mRNA_5864 0.16 -0.0
1,114,642 + 14232 mRNA_5864 0.26 -1.9