Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5813

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5812: 14180 - K02831 RAD53 ser/thr/tyr protein kinase RAD53, at 993823 to 996800 14180 mRNA_5813: 14181 - K15340 DCLRE1A, SNM1A, PSO2 DNA cross-link repair 1A protein, at 996990 to 1000538 14181 mRNA_5814: 14182 - K06669 SMC3, CSPG6 structural maintenance of chromosome 3 (chondroitin sulfate proteoglycan 6), at 1000707 to 1005630 14182

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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996,093 + 14180 mRNA_5812 0.76 -0.1
996,911 - -1.0
996,947 - -0.8
996,957 - -2.7
996,964 - -2.3
996,967 - -0.4
997,279 - -1.2
997,297 + -1.2
997,313 - -0.2
997,429 - 14181 mRNA_5813 0.12 -0.4
997,536 + 14181 mRNA_5813 0.15 1.2
997,885 - 14181 mRNA_5813 0.25 -1.8
997,929 - 14181 mRNA_5813 0.26 -1.7
998,035 - 14181 mRNA_5813 0.29 -0.6
998,156 + 14181 mRNA_5813 0.33 -1.3
998,327 - 14181 mRNA_5813 0.38 -0.0
998,328 + 14181 mRNA_5813 0.38 -3.1
998,328 + 14181 mRNA_5813 0.38 -1.0
998,441 - 14181 mRNA_5813 0.41 -1.9
998,473 - 14181 mRNA_5813 0.42 -2.1
999,026 + 14181 mRNA_5813 0.57 -2.1
999,041 + 14181 mRNA_5813 0.58 1.6
999,057 - 14181 mRNA_5813 0.58 -1.9
999,214 + 14181 mRNA_5813 0.63 -4.6
999,908 + 14181 mRNA_5813 0.82 -1.3
999,941 - 14181 mRNA_5813 0.83 -2.1
1,000,073 - 14181 mRNA_5813 0.87 1.1
1,000,213 - -0.0
1,000,219 + 0.7
1,000,222 - -0.3
1,000,368 + 1.4
1,000,368 + -0.5
1,000,514 + -2.3
1,000,653 - 1.1
1,000,657 + 0.2
1,000,660 - -0.0