Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5800

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5799: 14167 - K09540 SEC63, DNAJC23 translocation protein SEC63, at 967190 to 969688 14167 mRNA_5800: 14168 - K11801 WDR23 WD repeat-containing protein 23, at 970023 to 972593 14168 mRNA_5801: 14169 - HMMPfam-Helix-loop-helix DNA-binding domain-PF00010,ProSiteProfiles-Myc-type, basic helix-loop-helix (bHLH) domain profile.-PS50888,SMART-helix loop helix domain-SM00353,SUPERFAMILY--SSF47459, at 972859 to 974663 14169

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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969,706 - -2.1
969,718 + -1.7
969,735 + -1.4
969,819 + -1.6
969,867 - 1.5
969,883 + -1.2
969,906 + 0.0
969,933 - -1.6
969,972 - -0.5
969,974 + -0.9
970,184 + -0.9
970,225 + -0.8
970,328 + 14168 mRNA_5800 0.12 -0.9
970,337 - 14168 mRNA_5800 0.12 -0.9
970,337 - 14168 mRNA_5800 0.12 0.0
970,450 - 14168 mRNA_5800 0.17 -1.2
970,450 + 14168 mRNA_5800 0.17 -0.1
970,611 + 14168 mRNA_5800 0.23 0.3
971,023 + 14168 mRNA_5800 0.39 -1.8
971,052 + 14168 mRNA_5800 0.40 -2.6
971,178 + 14168 mRNA_5800 0.45 -2.1
971,312 - 14168 mRNA_5800 0.50 -0.2
971,592 + 14168 mRNA_5800 0.61 -0.2
971,613 - 14168 mRNA_5800 0.62 -3.3
971,775 - 14168 mRNA_5800 0.68 -0.0
972,037 - 14168 mRNA_5800 0.78 -1.3
972,198 + 14168 mRNA_5800 0.85 -2.1
972,210 + 14168 mRNA_5800 0.85 -0.7
972,305 - 14168 mRNA_5800 0.89 -3.7
972,321 - 14168 mRNA_5800 0.89 -0.9
972,357 + 1.6
972,483 - -0.6
972,490 + -3.6
972,512 + 0.7
972,563 - -0.6
972,625 + 0.7
972,630 + 0.7
972,638 + -0.4
972,648 - 0.1
972,652 + -0.3
972,778 - -1.4
972,798 - -0.5
972,799 + -2.6
972,810 + -2.1
972,929 - -1.8
972,932 - 1.0
973,101 - 14169 mRNA_5801 0.13 -2.9
973,104 + 14169 mRNA_5801 0.14 -4.1
973,123 + 14169 mRNA_5801 0.15 -1.0
973,222 - 14169 mRNA_5801 0.20 -1.5
973,224 - 14169 mRNA_5801 0.20 -0.4
973,232 + 14169 mRNA_5801 0.21 -0.3
973,243 + 14169 mRNA_5801 0.21 -1.9
973,402 + 14169 mRNA_5801 0.30 -0.8
973,501 + 14169 mRNA_5801 0.36 -1.8