Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5762

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5761: 14129 - K14997 SLC38A11 solute carrier family 38 (sodium-coupled neutral amino acid transporter), member 11, at 881466 to 883589 14129 mRNA_5762: 14130 - SUPERFAMILY--SSF47095, at 884263 to 884826 14130 mRNA_5763: 14131 - HMMPfam-Lactonase, 7-bladed beta-propeller-PF10282,SUPERFAMILY--SSF51004, at 884981 to 886323 14131

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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883,280 - 14129 mRNA_5761 0.85 -3.6
883,283 - 14129 mRNA_5761 0.86 -0.1
883,397 - -0.7
883,460 - 0.2
883,549 - -0.4
883,550 + -2.3
883,562 + -0.4
883,566 + -1.2
883,704 - -1.4
883,706 - -0.2
883,713 - 0.2
883,730 - -3.3
883,733 - 0.8
883,735 - -2.7
883,743 + -2.5
883,745 + -2.0
883,748 + 1.5
883,748 + 0.1
883,748 - -2.2
883,753 - 0.1
883,768 + 0.8
883,835 + -2.2
883,878 - -1.7
884,054 - -0.7
884,252 + -1.6
884,298 - -2.6
884,333 + 14130 mRNA_5762 0.12 0.6
884,496 - 14130 mRNA_5762 0.41 -1.3
884,655 + 14130 mRNA_5762 0.70 0.1
884,769 - 14130 mRNA_5762 0.90 2.3
884,782 - -1.2
884,795 - -1.7
884,795 - -2.2
884,801 + -1.4
885,080 - -2.0
885,252 + 14131 mRNA_5763 0.20 -4.3
885,501 - 14131 mRNA_5763 0.39 1.5
885,506 + 14131 mRNA_5763 0.39 -0.6
885,522 - 14131 mRNA_5763 0.40 -1.4
885,528 + 14131 mRNA_5763 0.41 -1.6