Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5756

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5755: 14123 - HMMPfam-PB1 domain-PF00564,SUPERFAMILY--SSF54277, at 868685 to 870428 14123 mRNA_5756: 14124 - HMMPfam-Myb-like DNA-binding domain-PF00249,ProSiteProfiles-Myb-like domain profile.-PS50090,ProSiteProfiles-Myb-type HTH DNA-binding domain profile.-PS51294,SMART-SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains-SM00717,SUPERFAMILY--SSF46689, at 870782 to 872057 14124 mRNA_5757: 14125 - HMMPfam-Glycosyl hydrolase catalytic core-PF11790,SUPERFAMILY--SSF51445, at 872220 to 874136 14125

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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869,816 - 14123 mRNA_5755 0.65 0.5
869,818 - 14123 mRNA_5755 0.65 -1.3
869,848 + 14123 mRNA_5755 0.67 -0.7
869,983 - 14123 mRNA_5755 0.74 -2.8
870,019 - 14123 mRNA_5755 0.76 -1.9
870,246 - 14123 mRNA_5755 0.90 -3.4
870,268 + -1.3
870,308 - -0.9
870,414 - -2.0
870,535 - -2.0
870,682 - 1.9
870,722 + -1.4
870,724 + 0.0
870,726 + -1.1
870,751 + -1.2
870,787 + -0.5
870,876 + -0.2
870,881 - 0.4
871,154 - 14124 mRNA_5756 0.29 -0.8
871,486 - 14124 mRNA_5756 0.55 -1.8
871,612 + 14124 mRNA_5756 0.65 -0.9
871,774 - 14124 mRNA_5756 0.78 1.2
871,908 - 14124 mRNA_5756 0.88 -1.8
872,034 - -1.3
872,074 + 0.2
872,718 - 14125 mRNA_5757 0.26 -0.7
872,720 - 14125 mRNA_5757 0.26 -0.3
872,778 - 14125 mRNA_5757 0.29 -1.7
872,789 + 14125 mRNA_5757 0.30 -0.1
872,905 + 14125 mRNA_5757 0.36 -0.6