Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5743

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5742: 14110 - BLAST spindle pole body protein [Moesziomyces antarcticus T..., at 827493 to 828317 14110 mRNA_5743: 14111 - K05672 ABCC12 ATP-binding cassette, subfamily C (CFTR/MRP), member 12, at 828542 to 833992 14111 mRNA_5744: 14112 - KOG0250 DNA repair protein RAD18 (SMC family protein), at 834713 to 839482 14112

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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827,545 + -1.1
827,547 - -0.2
827,547 - -3.8
827,547 - 0.2
827,549 - 0.5
827,585 - 14110 mRNA_5742 0.11 -0.4
827,602 - 14110 mRNA_5742 0.13 -3.8
827,647 + 14110 mRNA_5742 0.19 -1.0
827,711 - 14110 mRNA_5742 0.26 -0.4
828,569 - -0.9
828,719 + -1.3
828,721 + -0.2
828,894 + -2.5
829,303 + 14111 mRNA_5743 0.14 -2.0
829,335 + 14111 mRNA_5743 0.15 -1.7
829,484 - 14111 mRNA_5743 0.17 -0.4
829,730 - 14111 mRNA_5743 0.22 -1.9
829,741 + 14111 mRNA_5743 0.22 -0.6
829,775 - 14111 mRNA_5743 0.23 -0.3
829,842 - 14111 mRNA_5743 0.24 -1.5
829,927 + 14111 mRNA_5743 0.25 -1.6
829,934 - 14111 mRNA_5743 0.26 -1.7
830,231 - 14111 mRNA_5743 0.31 -0.4
830,237 + 14111 mRNA_5743 0.31 -2.2
830,528 + 14111 mRNA_5743 0.36 -1.4
830,990 + 14111 mRNA_5743 0.45 1.9
831,189 + 14111 mRNA_5743 0.49 -0.2
831,189 - 14111 mRNA_5743 0.49 -0.3
832,112 - 14111 mRNA_5743 0.65 -0.7
832,248 - 14111 mRNA_5743 0.68 -1.1
832,269 - 14111 mRNA_5743 0.68 -0.9
832,668 - 14111 mRNA_5743 0.76 -0.4
833,139 + 14111 mRNA_5743 0.84 -0.4
833,281 + 14111 mRNA_5743 0.87 0.1
833,854 - -2.7
833,876 - -1.4
833,881 - -2.8
834,001 - -0.0
834,003 - -0.7
834,018 - 1.0
834,025 + -1.2
834,037 - -2.6
834,038 + -2.3
834,052 + 1.0
834,145 - 1.3
834,178 - -0.6
834,179 + -0.5
834,180 - 1.0
834,184 + -1.7
834,184 - 1.2
834,189 + -2.3
834,189 + -0.6
834,189 + -4.2
834,202 - 0.2
834,203 - -2.3
834,207 + -4.1
834,315 - -1.0
834,316 - -2.6
834,325 - 0.1
834,331 + -0.1
834,333 - -2.7
834,335 - -0.4
834,342 - -3.3
834,343 + -1.6
834,343 + -3.0
834,345 + -1.3
834,345 - -2.5
834,348 + -1.5
834,349 - -0.5
834,352 - 1.0
834,354 + -1.5
834,355 - -1.6
834,359 - -0.9
834,362 + -0.8
834,378 + -0.7
834,381 + -0.9
834,384 - -1.5
834,385 - -2.7
834,396 + 1.2
834,405 + -1.5
834,413 - -1.8
834,414 + -0.2
834,426 + -2.1
834,430 + -0.1
834,439 + -1.8
834,500 - -1.0
834,611 - -2.8
834,654 + 0.1
834,655 - -0.1
834,656 + -2.2
834,658 - 1.4
834,665 + -3.6
834,667 - -1.9
834,667 - -3.5
834,676 - -1.0
834,688 + -4.2
834,690 - 0.1