Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5716

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5715: 14083 - BLAST Elongator complex protein 4 [Ceraceosorus bombacis], at 757827 to 758501 14083 mRNA_5716: 14084 - Hypothetical Protein, at 759003 to 760646 14084 mRNA_5717: 14085 - K20524 LSB5 LAS seventeen-binding protein 5, at 760959 to 763265 14085

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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758,059 + 14083 mRNA_5715 0.34 -1.9
758,080 + 14083 mRNA_5715 0.37 -0.7
758,094 - 14083 mRNA_5715 0.40 -1.3
758,187 + 14083 mRNA_5715 0.53 -0.9
758,370 - 14083 mRNA_5715 0.80 -0.5
758,383 - 14083 mRNA_5715 0.82 0.5
758,500 + -2.1
758,509 + -1.7
758,819 - 0.1
758,823 + -3.1
758,834 - -1.5
758,845 - -0.6
758,884 - -1.0
758,885 - -0.5
758,891 - -0.6
758,894 + -1.4
758,895 + -1.2
758,901 + -0.9
758,902 - -1.9
758,904 - -2.1
758,916 - -0.2
758,926 - -0.3
758,933 + 1.2
758,936 - -1.9
758,937 - -2.6
758,944 + -3.1
758,957 + -2.0
758,963 + -0.5
758,976 - 0.4
759,091 - -0.2
759,112 + -1.3
759,135 + 1.7
759,227 - 14084 mRNA_5716 0.14 -3.5
759,245 - 14084 mRNA_5716 0.15 -2.2
759,246 + 14084 mRNA_5716 0.15 -1.8
759,277 - 14084 mRNA_5716 0.17 -0.2
759,295 + 14084 mRNA_5716 0.18 -1.1
759,300 - 14084 mRNA_5716 0.18 -1.7
759,392 - 14084 mRNA_5716 0.24 -1.7
759,400 + 14084 mRNA_5716 0.24 0.3
759,556 + 14084 mRNA_5716 0.34 -0.4
759,569 - 14084 mRNA_5716 0.34 -0.3
759,853 + 14084 mRNA_5716 0.52 -0.4
760,159 + 14084 mRNA_5716 0.70 -0.6
760,299 + 14084 mRNA_5716 0.79 -1.7
760,455 + 14084 mRNA_5716 0.88 -3.2
760,559 - 1.1
760,871 - -1.7
760,872 - -1.5
760,878 + -0.6
760,880 - -1.1
760,882 - 1.4
760,886 + -0.3
760,899 + -2.6
760,899 + -1.1
760,901 + -1.9
761,037 + -2.3
761,041 + -1.6
761,064 - -1.7
761,208 + 14085 mRNA_5717 0.11 -2.8
761,322 - 14085 mRNA_5717 0.16 -3.2
761,325 + 14085 mRNA_5717 0.16 -2.9
761,327 - 14085 mRNA_5717 0.16 -1.7
761,613 - 14085 mRNA_5717 0.28 0.4