Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5702

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5700: 14068 - KOG0143 Iron/ascorbate family oxidoreductases, at 719283 to 720938 14068 mRNA_5701: 14069 - K13120 FAM32A protein FAM32A, at 721042 to 721632 14069 mRNA_5702: 14070 - K09478 ACADSB short/branched chain acyl-CoA dehydrogenase, at 721912 to 723848 14070 mRNA_5703: 14071 - KOG1289 Amino acid transporters, at 724681 to 726988 14071

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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720,940 - -0.9
721,397 + 14069 mRNA_5701 0.60 -0.7
721,548 - 14069 mRNA_5701 0.86 -2.0
721,557 + 14069 mRNA_5701 0.87 -2.4
721,686 + -0.8
721,686 - -2.1
721,689 + -1.9
721,693 + 0.2
721,699 + -0.1
721,704 + -0.9
721,711 + -1.4
721,712 + -0.1
721,714 - -0.4
721,816 - -1.3
721,816 + -0.9
721,818 + -1.6
721,826 - -3.0
721,836 - 0.7
721,836 - -2.6
721,842 + -1.0
721,844 + -2.2
721,856 - -2.4
721,861 + -3.1
721,993 - -1.7
721,994 + -0.1
722,144 - 14070 mRNA_5702 0.12 -2.1
722,155 + 14070 mRNA_5702 0.13 -0.2
722,839 - 14070 mRNA_5702 0.48 -2.0
722,849 + 14070 mRNA_5702 0.48 -1.8
723,014 + 14070 mRNA_5702 0.57 -1.9
723,355 + 14070 mRNA_5702 0.74 -1.2
723,872 - -1.3
724,175 - -0.9
724,196 + -1.0
724,307 - -1.2
724,316 - -1.8
724,325 - -4.1
724,329 - -0.3
724,339 + -1.4
724,352 + -2.4
724,370 + -1.2
724,447 + -2.7
724,455 - -2.5
724,479 + -0.9
724,588 + -0.3
724,629 - -0.5
724,634 - 1.6
724,635 + -2.2
724,640 - -1.1
724,641 + -1.0
724,642 + -1.8
724,646 + -0.1
724,646 + -0.6
724,776 - -1.5
724,778 - -2.9
724,780 - 0.3
724,797 - -3.5