Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5700

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5699: 14067 - HMMPfam-Vault protein inter-alpha-trypsin domain-PF08487,HMMPfam-von Willebrand factor type A domain-PF13768,ProSiteProfiles-VWFA domain profile.-PS50234,ProSiteProfiles-VIT domain profile.-PS51468,SMART-von Willebrand factor (vWF) type A domain-SM00327,SMART-Vault protein Inter-alpha-Trypsin domain-SM00609,SUPERFAMILY--SSF53300, at 716086 to 718925 14067 mRNA_5700: 14068 - KOG0143 Iron/ascorbate family oxidoreductases, at 719283 to 720938 14068 mRNA_5701: 14069 - K13120 FAM32A protein FAM32A, at 721042 to 721632 14069 mRNA_5702: 14070 - K09478 ACADSB short/branched chain acyl-CoA dehydrogenase, at 721912 to 723848 14070

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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718,470 - 14067 mRNA_5699 0.84 -1.1
718,523 - 14067 mRNA_5699 0.86 -1.4
718,692 - -1.3
718,943 - -2.2
718,975 - -2.3
718,980 + -1.5
719,018 + -0.4
719,020 - -0.3
719,044 - 0.7
719,050 + 0.4
719,070 + -1.6
719,144 - -1.6
719,177 + 1.3
719,197 + -1.5
719,315 - -0.7
719,359 + -1.8
719,405 - -2.8
719,417 + -0.5
719,437 - -2.4
719,440 - -0.6
719,440 + -2.0
719,450 - 14068 mRNA_5700 0.10 -0.6
719,450 - 14068 mRNA_5700 0.10 1.3
719,490 + 14068 mRNA_5700 0.12 0.1
719,492 - 14068 mRNA_5700 0.13 -0.4
719,493 + 14068 mRNA_5700 0.13 -0.8
719,495 - 14068 mRNA_5700 0.13 -0.5
719,509 + 14068 mRNA_5700 0.14 1.0
719,520 + 14068 mRNA_5700 0.14 -2.0
719,524 + 14068 mRNA_5700 0.15 -1.8
719,531 - 14068 mRNA_5700 0.15 -1.3
719,552 - 14068 mRNA_5700 0.16 -2.6
719,669 - 14068 mRNA_5700 0.23 -3.7
719,679 - 14068 mRNA_5700 0.24 -1.5
720,234 - 14068 mRNA_5700 0.57 -0.7
720,388 - 14068 mRNA_5700 0.67 0.4
720,681 - 14068 mRNA_5700 0.84 -0.5
720,801 + -1.5
720,940 - -0.9
721,397 + 14069 mRNA_5701 0.60 -0.7
721,548 - 14069 mRNA_5701 0.86 -2.0
721,557 + 14069 mRNA_5701 0.87 -2.4
721,686 + -0.8
721,686 - -2.1
721,689 + -1.9
721,693 + 0.2
721,699 + -0.1
721,704 + -0.9
721,711 + -1.4
721,712 + -0.1
721,714 - -0.4
721,816 - -1.3
721,816 + -0.9
721,818 + -1.6
721,826 - -3.0
721,836 - 0.7
721,836 - -2.6
721,842 + -1.0
721,844 + -2.2
721,856 - -2.4
721,861 + -3.1