Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5686

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5685: 14053 - HMMPfam-Complex 1 protein (LYR family)-PF05347, at 689401 to 690702 14053 mRNA_5686: 14054 - K05294 PGAP1 glycosylphosphatidylinositol deacylase, at 690842 to 694591 14054 mRNA_5687: 14055 - K08764 SCP2, SCPX sterol carrier protein 2, at 694932 to 696791 14055

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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690,241 - 14053 mRNA_5685 0.65 -1.0
690,722 - 0.2
690,741 + -1.9
690,751 + -3.0
690,765 + -1.4
690,861 + -1.4
690,910 - -2.2
691,052 - -1.9
691,603 + 14054 mRNA_5686 0.20 -2.3
691,614 - 14054 mRNA_5686 0.21 -1.6
691,616 - 14054 mRNA_5686 0.21 -2.4
691,639 + 14054 mRNA_5686 0.21 -1.4
691,650 - 14054 mRNA_5686 0.22 -0.8
691,650 - 14054 mRNA_5686 0.22 -1.0
692,085 - 14054 mRNA_5686 0.33 -1.7
692,375 - 14054 mRNA_5686 0.41 -4.0
692,541 + 14054 mRNA_5686 0.45 -2.2
692,652 + 14054 mRNA_5686 0.48 -1.4
692,789 + 14054 mRNA_5686 0.52 -1.5
693,106 + 14054 mRNA_5686 0.60 1.2
693,242 + 14054 mRNA_5686 0.64 -0.3
693,396 + 14054 mRNA_5686 0.68 -2.7
693,682 + 14054 mRNA_5686 0.76 -0.2
693,724 - 14054 mRNA_5686 0.77 -2.3
694,123 - 14054 mRNA_5686 0.87 -1.5
694,240 - -1.8
694,518 + -3.8
694,526 - -4.6
694,649 + -2.3
694,672 + -3.0
694,673 + -2.3
694,706 - -3.0
694,706 - -0.5
694,708 - -0.7
694,727 - -2.2
694,743 + -1.4
694,748 - -1.5
695,043 + -0.2
695,160 - 14055 mRNA_5687 0.12 -0.5
695,322 - 14055 mRNA_5687 0.21 -1.2
695,458 - 14055 mRNA_5687 0.28 0.2