Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5684

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5683: 14051 - K15505 RAD5 DNA repair protein RAD5, at 683055 to 687923 14051 mRNA_5684: 14052 - K07404 pgl 6-phosphogluconolactonase, at 687998 to 689292 14052 mRNA_5685: 14053 - HMMPfam-Complex 1 protein (LYR family)-PF05347, at 689401 to 690702 14053

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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687,000 + 14051 mRNA_5683 0.81 -0.4
687,144 + 14051 mRNA_5683 0.84 -3.3
687,294 + 14051 mRNA_5683 0.87 -0.3
687,367 + 14051 mRNA_5683 0.89 -4.0
687,490 + -1.4
687,504 + -2.4
687,609 - -0.0
688,016 + -1.9
688,169 - 14052 mRNA_5684 0.13 -1.5
688,197 + 14052 mRNA_5684 0.15 -2.7
688,416 - 14052 mRNA_5684 0.32 -0.1
688,488 - 14052 mRNA_5684 0.38 -1.0
688,494 - 14052 mRNA_5684 0.38 -2.7
688,756 + 14052 mRNA_5684 0.59 -0.4
688,764 - 14052 mRNA_5684 0.59 -2.2
688,776 - 14052 mRNA_5684 0.60 -2.2
688,778 - 14052 mRNA_5684 0.60 0.0
688,782 - 14052 mRNA_5684 0.61 -1.5
688,784 + 14052 mRNA_5684 0.61 -1.6
688,795 + 14052 mRNA_5684 0.62 -0.1
688,933 - 14052 mRNA_5684 0.72 -3.2
689,057 - 14052 mRNA_5684 0.82 -2.6
689,069 - 14052 mRNA_5684 0.83 -1.8
689,098 + 14052 mRNA_5684 0.85 -0.5
689,206 - -1.0
689,210 - -0.4
689,227 + -1.4
689,245 + -3.0
689,254 - -0.9
689,385 + -2.6
689,402 - -0.6
690,241 - 14053 mRNA_5685 0.65 -1.0