Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5680

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5679: 14047 - KOG1944 Peroxisomal membrane protein MPV17 and related proteins, at 675766 to 676852 14047 mRNA_5680: 14048 - Hypothetical Protein, at 677076 to 678500 14048 mRNA_5681: 14049 - KOG3146 Dolichyl pyrophosphate phosphatase and related acid phosphatases, at 678891 to 679763 14049

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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676,395 + 14047 mRNA_5679 0.58 0.1
676,815 + -1.3
676,819 + -0.4
676,839 + -0.8
676,952 + -1.4
676,960 - -1.1
676,966 + -1.8
676,979 + -0.1
676,979 - -2.2
676,984 - 0.4
676,985 + -2.4
676,991 - -0.3
677,097 + 0.6
677,101 + -1.9
677,125 + -1.7
677,244 - 14048 mRNA_5680 0.12 0.9
677,416 - 14048 mRNA_5680 0.24 -1.0
677,561 - 14048 mRNA_5680 0.34 0.8
677,860 - 14048 mRNA_5680 0.55 -1.8
677,980 - 14048 mRNA_5680 0.63 -2.3
678,121 + 14048 mRNA_5680 0.73 -0.6
678,142 + 14048 mRNA_5680 0.75 -1.1
678,256 - 14048 mRNA_5680 0.83 -2.6
678,282 - 14048 mRNA_5680 0.85 -1.2
678,294 + 14048 mRNA_5680 0.85 -1.0
678,423 + 0.1
678,551 - -1.1
678,553 + -2.5
678,554 - -1.2
678,724 + -2.7
678,730 - -3.3
678,759 + -1.4
678,837 - -2.7
678,872 - -1.7