Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5679

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5678: 14046 - K06005 SAP candidapepsin, at 673852 to 675422 14046 mRNA_5679: 14047 - KOG1944 Peroxisomal membrane protein MPV17 and related proteins, at 675766 to 676852 14047 mRNA_5680: 14048 - Hypothetical Protein, at 677076 to 678500 14048

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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674,811 - 14046 mRNA_5678 0.61 0.0
674,817 - 14046 mRNA_5678 0.61 -0.4
674,818 + 14046 mRNA_5678 0.61 -1.2
675,042 + 14046 mRNA_5678 0.76 -1.5
675,095 + 14046 mRNA_5678 0.79 -0.6
675,215 - 14046 mRNA_5678 0.87 -1.4
675,492 + -2.7
675,542 + -0.9
675,585 - -1.8
675,654 + -2.0
676,395 + 14047 mRNA_5679 0.58 0.1
676,815 + -1.3
676,819 + -0.4
676,839 + -0.8
676,952 + -1.4
676,960 - -1.1
676,966 + -1.8
676,979 + -0.1
676,979 - -2.2
676,984 - 0.4
676,985 + -2.4
676,991 - -0.3
677,097 + 0.6
677,101 + -1.9
677,125 + -1.7
677,244 - 14048 mRNA_5680 0.12 0.9
677,416 - 14048 mRNA_5680 0.24 -1.0
677,561 - 14048 mRNA_5680 0.34 0.8