Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5668

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5667: 14035 - K11233 SSK1 osomolarity two-component system, response regulator SSK1, at 642793 to 648199 14035 mRNA_5668: 14036 - K01227 E3.2.1.96 mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase, at 648393 to 650754 14036 mRNA_5669: 14037 - K01736 aroC chorismate synthase, at 651115 to 652658 14037

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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647,500 + 14035 mRNA_5667 0.87 -1.8
647,524 + 14035 mRNA_5667 0.87 1.1
647,639 + 14035 mRNA_5667 0.90 -1.1
647,807 + -0.9
648,379 + -2.1
648,742 + 14036 mRNA_5668 0.15 0.5
648,868 + 14036 mRNA_5668 0.20 -2.7
649,135 + 14036 mRNA_5668 0.31 -0.7
649,147 - 14036 mRNA_5668 0.32 0.8
649,534 - 14036 mRNA_5668 0.48 -0.6
649,755 - 14036 mRNA_5668 0.58 0.1
649,898 + 14036 mRNA_5668 0.64 0.5
650,020 + 14036 mRNA_5668 0.69 -1.3
650,020 + 14036 mRNA_5668 0.69 -2.4
650,036 - 14036 mRNA_5668 0.70 -2.3
650,215 - 14036 mRNA_5668 0.77 -0.1
650,219 + 14036 mRNA_5668 0.77 -1.4
650,248 + 14036 mRNA_5668 0.79 -0.1
650,479 - 14036 mRNA_5668 0.88 -3.0
650,639 - -1.0
650,640 + -0.9
650,645 + -1.9
650,787 - -0.3