Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5657

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5656: 14024 - HMMPfam-Universal stress protein family-PF00582,PRINTS-Universal stress protein signature-PR01438,SUPERFAMILY--SSF52402, at 615931 to 617472 14024 mRNA_5657: 14025 - SUPERFAMILY--SSF52047, at 617641 to 619056 14025 mRNA_5658: 14026 - SUPERFAMILY--SSF52047, at 619237 to 620685 14026

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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617,583 - 1.9
617,796 - 14025 mRNA_5657 0.11 -3.2
617,890 + 14025 mRNA_5657 0.18 -0.3
618,044 - 14025 mRNA_5657 0.28 -2.5
618,150 + 14025 mRNA_5657 0.36 0.3
618,206 + 14025 mRNA_5657 0.40 -2.1
618,478 - 14025 mRNA_5657 0.59 -0.3
618,528 + 14025 mRNA_5657 0.63 -1.8
618,684 - 14025 mRNA_5657 0.74 -0.5
618,772 - 14025 mRNA_5657 0.80 -0.6
618,817 + 14025 mRNA_5657 0.83 -1.9
618,824 + 14025 mRNA_5657 0.84 -2.4
618,960 - -1.3
618,981 + -1.7
619,012 + -1.5
619,126 + -1.5
619,373 + -0.9
619,413 + 14026 mRNA_5658 0.12 -3.1
619,863 - 14026 mRNA_5658 0.43 -1.9
619,868 - 14026 mRNA_5658 0.44 -3.2
620,046 + 14026 mRNA_5658 0.56 -0.1