Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5655

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5654: 14022 - K01637 E4.1.3.1, aceA isocitrate lyase, at 605186 to 607588 14022 mRNA_5655: 14023 - K01115 PLD1_2 phospholipase D1/2, at 607805 to 615263 14023 mRNA_5656: 14024 - HMMPfam-Universal stress protein family-PF00582,PRINTS-Universal stress protein signature-PR01438,SUPERFAMILY--SSF52402, at 615931 to 617472 14024

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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606,899 - 14022 mRNA_5654 0.71 2.3
607,001 - 14022 mRNA_5654 0.76 -0.8
607,063 + 14022 mRNA_5654 0.78 -1.5
607,108 - 14022 mRNA_5654 0.80 -1.2
607,157 + 14022 mRNA_5654 0.82 -0.2
607,184 - 14022 mRNA_5654 0.83 -0.6
607,186 + 14022 mRNA_5654 0.83 -2.4
607,205 + 14022 mRNA_5654 0.84 -2.3
607,206 + 14022 mRNA_5654 0.84 -2.6
607,207 - 14022 mRNA_5654 0.84 -0.9
607,208 - 14022 mRNA_5654 0.84 -3.4
607,209 + 14022 mRNA_5654 0.84 -1.0
607,352 + -0.9
607,518 - -1.0
607,643 - -2.1
607,646 + -0.8
607,648 - -2.4
607,653 + -0.5
607,656 + -0.1
607,659 + -1.3
607,659 + -1.3
607,661 - -3.2
607,668 - -0.4
607,668 - -0.7
607,669 - -2.1
607,671 + 0.9
607,673 - -1.7
607,680 + -0.9
607,681 + -1.9
607,684 - -0.5
607,690 + -0.6
607,709 + -0.6
607,760 + -0.7
607,763 + -0.6
607,769 + -0.0
607,770 - -0.9
607,786 + -1.0
607,818 - -1.9
607,821 + -0.4
607,827 - -1.2
607,853 - -0.7
608,735 + 14023 mRNA_5655 0.12 0.4
608,798 - 14023 mRNA_5655 0.13 1.2
609,616 - 14023 mRNA_5655 0.24 -2.6
609,788 - 14023 mRNA_5655 0.27 1.4
609,901 + 14023 mRNA_5655 0.28 -0.0
610,009 + 14023 mRNA_5655 0.30 -0.5
610,221 + 14023 mRNA_5655 0.32 -2.3
610,322 + 14023 mRNA_5655 0.34 2.1
610,874 + 14023 mRNA_5655 0.41 0.4
610,946 - 14023 mRNA_5655 0.42 -0.4
611,927 + 14023 mRNA_5655 0.55 -1.3
612,091 - 14023 mRNA_5655 0.57 -0.1
612,674 + 14023 mRNA_5655 0.65 -2.9
612,851 + 14023 mRNA_5655 0.68 -2.2
613,163 - 14023 mRNA_5655 0.72 -0.6
613,979 - 14023 mRNA_5655 0.83 0.1
613,985 - 14023 mRNA_5655 0.83 -0.7
614,151 - 14023 mRNA_5655 0.85 -1.8
614,446 - 14023 mRNA_5655 0.89 -0.9
614,556 - -3.0
614,585 - -0.1
614,758 - 1.4
615,316 + -1.8
615,343 + -1.0
615,347 + -1.1
615,464 - -2.3
615,511 - -1.1
615,514 + 0.4
615,516 + -2.3
615,529 - -2.4
615,653 - -1.7