Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5654

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5653: 14021 - Hypothetical Protein, at 603450 to 604586 14021 mRNA_5654: 14022 - K01637 E4.1.3.1, aceA isocitrate lyase, at 605186 to 607588 14022 mRNA_5655: 14023 - K01115 PLD1_2 phospholipase D1/2, at 607805 to 615263 14023

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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604,398 + 14021 mRNA_5653 0.83 -3.2
604,546 - 0.5
604,660 - 1.4
604,709 - -2.0
604,809 + -0.8
604,811 + -1.0
604,813 - -1.8
604,850 - 1.0
604,891 - -0.7
604,893 + -1.7
604,897 - -1.3
604,900 + 0.8
604,915 + -0.4
604,916 + -2.3
604,928 - 0.5
604,928 - -1.5
604,928 - -1.5
604,934 - -2.3
604,945 - -2.3
604,987 - -2.0
604,988 - -2.0
605,001 + -2.2
605,005 - -1.9
605,005 + -0.3
605,178 - -1.5
605,456 + 14022 mRNA_5654 0.11 0.5
605,569 + 14022 mRNA_5654 0.16 -1.8
606,167 + 14022 mRNA_5654 0.41 -2.6
606,332 + 14022 mRNA_5654 0.48 1.8
606,899 - 14022 mRNA_5654 0.71 2.3
607,001 - 14022 mRNA_5654 0.76 -0.8
607,063 + 14022 mRNA_5654 0.78 -1.5
607,108 - 14022 mRNA_5654 0.80 -1.2
607,157 + 14022 mRNA_5654 0.82 -0.2
607,184 - 14022 mRNA_5654 0.83 -0.6
607,186 + 14022 mRNA_5654 0.83 -2.4
607,205 + 14022 mRNA_5654 0.84 -2.3
607,206 + 14022 mRNA_5654 0.84 -2.6
607,207 - 14022 mRNA_5654 0.84 -0.9
607,208 - 14022 mRNA_5654 0.84 -3.4
607,209 + 14022 mRNA_5654 0.84 -1.0
607,352 + -0.9
607,518 - -1.0
607,643 - -2.1
607,646 + -0.8
607,648 - -2.4
607,653 + -0.5
607,656 + -0.1
607,659 + -1.3
607,659 + -1.3
607,661 - -3.2
607,668 - -0.4
607,668 - -0.7
607,669 - -2.1
607,671 + 0.9
607,673 - -1.7
607,680 + -0.9
607,681 + -1.9
607,684 - -0.5
607,690 + -0.6
607,709 + -0.6
607,760 + -0.7
607,763 + -0.6
607,769 + -0.0
607,770 - -0.9
607,786 + -1.0
607,818 - -1.9
607,821 + -0.4
607,827 - -1.2
607,853 - -0.7