Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5647

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5646: 14014 - K00826 E2.6.1.42, ilvE branched-chain amino acid aminotransferase, at 586465 to 587964 14014 mRNA_5647: 14015 - KOG4719 Nuclear pore complex protein, at 588479 to 592654 14015 mRNA_5648: 14016 - K11268 ESCO, ECO1 N-acetyltransferase, at 592841 to 594405 14016

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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587,808 + 14014 mRNA_5646 0.90 -1.4
587,882 - -2.1
587,908 + 0.2
587,931 - 0.2
588,054 + -0.5
588,057 - -1.9
588,057 - -1.1
588,058 + 0.5
588,101 + -1.2
588,106 + 1.0
588,107 + -2.0
588,121 + -1.7
588,213 + -2.3
588,250 + 0.8
588,548 - -0.6
588,661 - -0.7
588,804 - -2.1
588,824 + -1.5
589,984 + 14015 mRNA_5647 0.36 -0.9
590,019 - 14015 mRNA_5647 0.37 -1.2
590,536 - 14015 mRNA_5647 0.49 -0.5
590,577 - 14015 mRNA_5647 0.50 -0.5
590,652 - 14015 mRNA_5647 0.52 -1.6
590,880 - 14015 mRNA_5647 0.57 -1.0
591,744 - 14015 mRNA_5647 0.78 -0.3
592,210 - 14015 mRNA_5647 0.89 0.0
592,299 - -2.7
592,319 - 0.9
592,394 - -1.2
592,445 - -1.1
592,549 - -3.5
592,693 - -0.2
592,723 + -1.4
592,771 + -1.5
593,125 + 14016 mRNA_5648 0.18 -2.5
593,637 + 14016 mRNA_5648 0.51 0.8