Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5646

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5645: 14013 - BLAST putative alkaline phosphatase [Phaeomoniella chlamydo..., at 584713 to 586254 14013 mRNA_5646: 14014 - K00826 E2.6.1.42, ilvE branched-chain amino acid aminotransferase, at 586465 to 587964 14014 mRNA_5647: 14015 - KOG4719 Nuclear pore complex protein, at 588479 to 592654 14015

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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585,542 - 14013 mRNA_5645 0.54 -1.0
585,817 + 14013 mRNA_5645 0.72 -0.3
585,839 - 14013 mRNA_5645 0.73 -1.2
585,844 + 14013 mRNA_5645 0.73 -2.0
585,872 + 14013 mRNA_5645 0.75 -1.3
586,004 - 14013 mRNA_5645 0.84 1.4
586,166 + -3.0
586,166 + -0.0
586,167 + -2.1
586,283 - -2.3
586,304 - -1.3
586,310 - -1.2
586,316 + -3.2
586,325 + -1.9
586,332 + -2.8
586,333 + -0.3
586,333 - -3.3
586,333 - 0.0
586,354 + -1.1
586,381 - -0.2
586,400 - -3.0
586,407 + -2.1
586,413 + -0.6
586,428 + -0.6
586,435 + 0.3
586,435 + 0.1
586,435 + -1.2
586,442 - -2.2
586,453 + -1.8
586,457 + -0.4
586,464 + -1.5
586,464 - -1.5
586,601 + -0.5
586,609 - -0.0
586,638 + 14014 mRNA_5646 0.12 -2.5
586,877 + 14014 mRNA_5646 0.27 0.2
586,906 + 14014 mRNA_5646 0.29 -0.8
587,037 - 14014 mRNA_5646 0.38 -1.3
587,808 + 14014 mRNA_5646 0.90 -1.4
587,882 - -2.1
587,908 + 0.2
587,931 - 0.2
588,054 + -0.5
588,057 - -1.9
588,057 - -1.1
588,058 + 0.5
588,101 + -1.2
588,106 + 1.0
588,107 + -2.0
588,121 + -1.7
588,213 + -2.3
588,250 + 0.8
588,548 - -0.6
588,661 - -0.7
588,804 - -2.1
588,824 + -1.5