Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5637

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5636: 14004 - BLAST Regulator of phospholipase D SRF1 [Hypsizygus marmoreus], at 564941 to 566584 14004 mRNA_5637: 14005 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701, at 566875 to 570624 14005 mRNA_5638: 14006 - Hypothetical Protein, at 570923 to 572239 14006

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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565,890 + 14004 mRNA_5636 0.58 -1.0
566,035 - 14004 mRNA_5636 0.67 -0.3
566,039 + 14004 mRNA_5636 0.67 -2.4
566,040 + 14004 mRNA_5636 0.67 -1.6
566,196 + 14004 mRNA_5636 0.76 -0.5
566,197 + 14004 mRNA_5636 0.76 -0.2
566,354 - 14004 mRNA_5636 0.86 -2.1
566,364 + 14004 mRNA_5636 0.87 -0.1
566,483 - -2.8
566,500 + -1.9
566,662 + 0.2
566,673 + 0.8
566,789 - -1.4
566,822 - -1.7
567,038 - -0.5
567,375 + 14005 mRNA_5637 0.13 -0.7
567,640 - 14005 mRNA_5637 0.20 -1.3
567,711 - 14005 mRNA_5637 0.22 -4.4
567,958 + 14005 mRNA_5637 0.29 0.2
568,009 - 14005 mRNA_5637 0.30 -1.7
568,143 + 14005 mRNA_5637 0.34 -2.9
568,257 - 14005 mRNA_5637 0.37 -0.8
569,163 - 14005 mRNA_5637 0.61 -3.1
569,232 + 14005 mRNA_5637 0.63 -0.7
569,245 - 14005 mRNA_5637 0.63 0.9
569,901 - 14005 mRNA_5637 0.81 0.6
570,039 + 14005 mRNA_5637 0.84 -0.8
570,048 + 14005 mRNA_5637 0.85 0.1
570,145 - 14005 mRNA_5637 0.87 -2.1
570,180 - 14005 mRNA_5637 0.88 -1.3
570,329 - -3.0
570,451 + -3.6
570,458 + -1.0
570,461 - -1.5
570,469 + -1.6
570,473 + -2.0
570,589 + -1.6
570,769 + -0.5
570,784 + -3.8
570,784 - -1.5
570,788 - -3.1
571,219 - 14006 mRNA_5638 0.22 -0.8
571,392 + 14006 mRNA_5638 0.36 -2.2
571,537 - 14006 mRNA_5638 0.47 -1.0
571,544 + 14006 mRNA_5638 0.47 -0.6
571,549 + 14006 mRNA_5638 0.48 -2.4