Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5630

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5629: 13997 - K15430 TRM11, TRMT11 tRNA (guanine10-N2)-methyltransferase, at 547536 to 549644 13997 mRNA_5630: 13998 - HMMPfam-SUR7/PalI family-PF06687, at 549852 to 551893 13998 mRNA_5631: 13999 - KOG4197 FOG PPR repeat, at 552322 to 556680 13999

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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549,048 - 13997 mRNA_5629 0.72 -0.6
549,065 + 13997 mRNA_5629 0.72 -0.6
549,100 + 13997 mRNA_5629 0.74 -1.2
549,528 - 2.3
549,601 + -1.7
549,794 - -1.9
549,797 + -1.5
549,818 - -0.3
549,923 - -1.3
549,988 + -0.2
550,085 + 13998 mRNA_5630 0.11 1.2
550,092 + 13998 mRNA_5630 0.12 -0.8
550,273 + 13998 mRNA_5630 0.21 -4.0
550,624 - 13998 mRNA_5630 0.38 -2.0
550,639 + 13998 mRNA_5630 0.39 0.5
550,677 - 13998 mRNA_5630 0.40 -1.2
550,891 - 13998 mRNA_5630 0.51 1.2
550,904 + 13998 mRNA_5630 0.52 -2.2
550,979 - 13998 mRNA_5630 0.55 -0.9
551,102 + 13998 mRNA_5630 0.61 -1.5
551,207 + 13998 mRNA_5630 0.66 -0.8
551,479 + 13998 mRNA_5630 0.80 -1.2
551,779 - -2.5
551,793 + -1.4
551,808 + -0.3
551,840 + 0.7
551,842 - -1.9
551,942 - -2.0
551,945 - -2.3
551,957 - -0.3
551,961 + -3.0
551,963 - -1.1
551,964 + -1.5
551,966 + -0.0
551,971 + -1.5
551,977 + -2.9
551,979 + -0.8
551,979 + -1.2
552,118 + -0.8
552,233 + 0.7
552,418 + 0.6