Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5617

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5616: 13984 - HMMPfam-GRF zinc finger-PF06839, at 521417 to 522202 13984 mRNA_5617: 13985 - BLAST beta-flanking protein [Kwoniella dejecticola CBS ..., at 522586 to 523883 13985 mRNA_5618: 13986 - K09866 AQP4 aquaporin-4, at 524423 to 526190 13986

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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521,634 - 13984 mRNA_5616 0.28 -1.0
521,982 - 13984 mRNA_5616 0.72 -3.4
522,386 + -3.2
522,389 - 0.2
522,523 - 0.1
522,529 - -0.1
522,844 - 13985 mRNA_5617 0.20 -2.0
522,846 - 13985 mRNA_5617 0.20 -2.7
522,860 - 13985 mRNA_5617 0.21 -3.2
523,003 + 13985 mRNA_5617 0.32 -0.4
523,728 + 13985 mRNA_5617 0.88 -1.5
523,832 - 0.0
523,985 - -1.3
524,050 + -1.0
524,100 - -3.4
524,192 + -4.3
524,544 + -3.5
524,665 - 13986 mRNA_5618 0.14 -0.8
524,682 - 13986 mRNA_5618 0.15 0.6
524,810 + 13986 mRNA_5618 0.22 1.1