Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5611

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5610: 13978 - KOG1611 Predicted short chain-type dehydrogenase, at 504670 to 507396 13978 mRNA_5611: 13979 - HMMPfam-Protein of unknown function (DUF2433)-PF10360, at 507663 to 510497 13979 mRNA_5612: 13980 - K14213 PEPD Xaa-Pro dipeptidase, at 510647 to 512391 13980

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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506,820 + 13978 mRNA_5610 0.79 -2.2
506,991 + 13978 mRNA_5610 0.85 -1.5
507,001 + 13978 mRNA_5610 0.85 -1.6
507,269 - -2.3
507,284 - -3.8
507,292 + -1.6
507,378 + -1.9
507,570 - -2.2
507,594 + -2.2
507,611 - -1.2
508,178 - 13979 mRNA_5611 0.18 0.7
510,099 + 13979 mRNA_5611 0.86 -2.1
510,378 - -0.8
510,716 - -2.0
511,012 - 13980 mRNA_5612 0.21 -2.6
511,029 - 13980 mRNA_5612 0.22 -2.6
511,464 - 13980 mRNA_5612 0.47 -0.7