Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5609

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5608: 13976 - K03018 RPC1, POLR3A DNA-directed RNA polymerase III subunit RPC1, at 494885 to 501857 13976 mRNA_5609: 13977 - HMMPfam-Leucine Rich Repeat-PF00560,ProSiteProfiles-Leucine-rich repeat profile.-PS51450,SMART-Leucine-rich repeats, typical (most populated) subfamily-SM00369,SUPERFAMILY--SSF52058, at 502227 to 504581 13977 mRNA_5610: 13978 - KOG1611 Predicted short chain-type dehydrogenase, at 504670 to 507396 13978

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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501,868 - -1.3
502,016 - -2.2
502,129 - -2.1
502,143 - 0.8
502,152 - 1.1
502,153 - -2.8
502,154 + -0.4
502,157 - -0.5
502,293 - -2.6
502,452 - -2.5
502,473 - 13977 mRNA_5609 0.10 -1.8
502,477 + 13977 mRNA_5609 0.11 -1.1
502,477 + 13977 mRNA_5609 0.11 -3.1
502,748 + 13977 mRNA_5609 0.22 0.4
503,040 - 13977 mRNA_5609 0.35 -1.4
503,646 - 13977 mRNA_5609 0.60 -1.5
503,891 + 13977 mRNA_5609 0.71 0.8
503,903 + 13977 mRNA_5609 0.71 -2.3
504,176 - 13977 mRNA_5609 0.83 1.0
504,191 - 13977 mRNA_5609 0.83 -1.8
504,191 - 13977 mRNA_5609 0.83 -0.5
504,222 + 13977 mRNA_5609 0.85 -3.1
504,286 + 13977 mRNA_5609 0.87 -0.9
505,095 + 13978 mRNA_5610 0.16 -2.7
505,536 + 13978 mRNA_5610 0.32 -2.1